Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18p09
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   4.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   7.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.7  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 342 KDELLRIKATMLKWQEVKDRQKRPTVNVEVAKRLVRNGLYD 464
           K EL R  A   KW+   +++K    ++   +R+  NGL D
Sbjct: 857 KMELARHAAD--KWRGAIEKRKTLRASIAAQRRIQSNGLND 895


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 397 IARKDPPLTLKW 432
           +A  DPPLT+ W
Sbjct: 634 VAAGDPPLTISW 645


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 586 IFLKNTKIVKNYR*LILSTNYSSLSENFIRLFSCFT 479
           I ++NT+   N + +++  NYS+L  +  +  S FT
Sbjct: 178 IAIQNTQGKNNQQNILIPVNYSALLSHDEQQLSYFT 213



 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 147 NVENLKENLIEVQQ 188
           NVE L ENL+  QQ
Sbjct: 696 NVEVLPENLVNAQQ 709


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 436 FATSTLTVGLFWRSF 392
           FA STL V L W SF
Sbjct: 207 FAPSTLVVMLSWFSF 221


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -1

Query: 258 LVQSELVVTFCRNFSSTEGVYR 193
           L+  +++   C++ +ST  +YR
Sbjct: 18  LLHGQVICFVCKDITSTSALYR 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,249
Number of Sequences: 438
Number of extensions: 3312
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)