Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18p08
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1083 - 8519987-8520254,8520442-8520554                           28   5.2  
07_03_0876 - 22215688-22215789,22216051-22216206,22217227-222172...    27   9.0  
02_05_0292 + 27581862-27581913,27582395-27582615,27582691-275830...    27   9.0  

>01_01_1083 - 8519987-8520254,8520442-8520554
          Length = 126

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = +1

Query: 421 PEPAPDKSGEEIIPKTTKIERAKAMNNEKKSKFKSKILNRNYDDNFIVLKINEQ 582
           P PA  +SGEEII  T K E  +  N   + +   +  +   +DN   LK NEQ
Sbjct: 33  PAPAQVQSGEEII-STLKYELEEKRNQVHRLQDDIEKCHVLIEDNAAKLKDNEQ 85


>07_03_0876 -
           22215688-22215789,22216051-22216206,22217227-22217247,
           22217311-22217580,22217793-22219178,22220562-22220621
          Length = 664

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 319 LKTLPNQITRRRDNKQFLSSVLNILSKGTT 408
           L T+   +T  RD +QFLSS++  + +G T
Sbjct: 192 LPTMEGIVTNARDTRQFLSSIVWSIWEGVT 221


>02_05_0292 +
           27581862-27581913,27582395-27582615,27582691-27583087,
           27583645-27583730,27584229-27584292,27584395-27584507,
           27584998-27585036,27585037-27585177
          Length = 370

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/53 (22%), Positives = 27/53 (50%)
 Frame = -3

Query: 588 LLLFVDFQYNEIIIVIPV*DFRFKFTLFFVVHRFRSLDFSSFWYNFFAAFVRG 430
           +L+FV+F Y  +++      F+F FT+ + +   + L F     ++ + +  G
Sbjct: 290 ILVFVNFSYTLMVLNYSCIGFQFVFTMLYTLRFLQVLSFKETLASYQSVYYIG 342


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,272,770
Number of Sequences: 37544
Number of extensions: 208786
Number of successful extensions: 632
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)