Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18p04
(574 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0411 - 17725661-17725842,17726066-17726104,17726379-177264... 87 9e-18
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53... 87 9e-18
03_06_0698 + 35608666-35608709,35608810-35608958,35609493-356095... 55 4e-08
08_02_0850 + 21862110-21862394,21862555-21862723,21862901-218629... 29 2.0
02_04_0468 - 23172561-23174201 28 4.6
02_01_0203 + 1369986-1370078,1372797-1372844,1373376-1373411,137... 28 4.6
12_01_0667 + 5674322-5674393,5674455-5675159,5676051-5676087,567... 28 6.1
11_02_0028 + 7517196-7517206,7517256-7517312,7517423-7517503,751... 27 8.0
05_05_0342 - 24231924-24232178,24232271-24232653,24232778-24232790 27 8.0
>10_08_0411 -
17725661-17725842,17726066-17726104,17726379-17726435,
17726524-17726672,17727195-17727262,17727796-17727798
Length = 165
Score = 87.0 bits (206), Expect = 9e-18
Identities = 41/84 (48%), Positives = 57/84 (67%)
Frame = +3
Query: 291 VNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGP 470
VNTIPGIEEVN+ K+D VI F NPK QAS+ ANT+ ++G + K+ ++LP I++QLGP
Sbjct: 49 VNTIPGIEEVNIFKDD-VVIQFLNPKVQASIGANTWVVSGTPQTKKLQDLLPSIINQLGP 107
Query: 471 DGLNRLKRIASSVAAPKPLEEDDE 542
D L+ L+R+A P +E
Sbjct: 108 DNLDNLRRLAEQFQKQAPGASGEE 131
Score = 54.4 bits (125), Expect = 6e-08
Identities = 25/46 (54%), Positives = 31/46 (67%)
Frame = +2
Query: 149 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDKKTAVIAQKV 286
MN +KLKK+ VR GGKG+ RRKKK VH T TDDK+ ++V
Sbjct: 2 MNVDKLKKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRV 47
>03_01_0067 -
538929-539143,539306-539344,539579-539635,539727-539875,
540298-540365,542009-542093,542185-542246,542612-542700,
543034-543088,544127-544252,544477-544576,544697-545499
Length = 615
Score = 87.0 bits (206), Expect = 9e-18
Identities = 45/100 (45%), Positives = 65/100 (65%), Gaps = 11/100 (11%)
Frame = +3
Query: 291 VNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGP 470
VN IPGIEEVN+ K+D VI F NPK QAS+ ANT+ ++G + K+ ++LP I++QLGP
Sbjct: 488 VNNIPGIEEVNIFKDD-VVIQFQNPKVQASIGANTWVVSGTPQTKKLQDLLPTIINQLGP 546
Query: 471 DGLNRLKRIA-----------SSVAAPKPLEEDDEVPNLV 557
D L+ L+R+A + +A ++DD+VP LV
Sbjct: 547 DNLDNLRRLAEQFQKQVPGAEAGASAGNAQDDDDDVPELV 586
Score = 54.4 bits (125), Expect = 6e-08
Identities = 25/46 (54%), Positives = 31/46 (67%)
Frame = +2
Query: 149 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDKKTAVIAQKV 286
MN +KLKK+ VR GGKG+ RRKKK VH T TDDK+ ++V
Sbjct: 441 MNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRV 486
>03_06_0698 +
35608666-35608709,35608810-35608958,35609493-35609531,
35610024-35610163,35611130-35611244,35611281-35611399,
35611413-35611979
Length = 390
Score = 55.2 bits (127), Expect = 4e-08
Identities = 43/105 (40%), Positives = 54/105 (51%), Gaps = 11/105 (10%)
Frame = +3
Query: 291 VNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGP 470
VNTIP IEEVN+ K+D VI F NPK + ++LPGI++QLGP
Sbjct: 40 VNTIPAIEEVNIFKDD-LVIQFVNPK-------------------ELQDVLPGIINQLGP 79
Query: 471 DGLNRLKRI---------ASSVAAPKPLEEDDEVPNLV--GNFDE 572
D + LKRI A+ A E DD+VP LV NF+E
Sbjct: 80 DNMEHLKRIAEEMQKQVAAAGATAQAKEENDDDVPELVPGENFEE 124
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +2
Query: 185 VRIGGKGTPRRKKKVVHVTAATDDKKTAVIAQKV 286
VR GGKGT RRKKK VH T TDDK+ ++V
Sbjct: 5 VRTGGKGTVRRKKKAVHKTGTTDDKRLQSTLKRV 38
>08_02_0850 +
21862110-21862394,21862555-21862723,21862901-21862965,
21863632-21863905,21863998-21864145,21864237-21864346,
21864440-21864495,21864568-21864624,21864733-21864876,
21865304-21865351
Length = 451
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 481 FKPSGPSWLRIPGSISVVCLFSPCPVIANVFAAS 380
F P GP W + PGS + +PCP A++F++S
Sbjct: 207 FYPLGPVW-QPPGSSTSKAPSAPCPPSASLFSSS 239
>02_04_0468 - 23172561-23174201
Length = 546
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 316 SSMPGIVFTDNFLSDDCSFFVICGR 242
SS PG +++ FL D C F++ GR
Sbjct: 301 SSAPGADYSNEFLRDFCISFILAGR 325
>02_01_0203 +
1369986-1370078,1372797-1372844,1373376-1373411,
1374013-1374150
Length = 104
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 209 PRRKKKVVHVTAATDDKKTAVIAQKVVSEHNSWHRRG 319
P R++K H+T+A+ T ++A + + EH++ G
Sbjct: 63 PSRQRKSEHMTSASSGITTMMVAPRRIPEHDTMEEGG 99
>12_01_0667 +
5674322-5674393,5674455-5675159,5676051-5676087,
5676238-5676335,5676452-5676475
Length = 311
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +2
Query: 86 NSVIKK-CPVLTLTQFTLKNSRMNSEKLKKLQS--QVRIGGKGTPRRKKKVVHVTAAT 250
++V+++ C + + + LK E+LKKL + R GG G P R K +H+ +A+
Sbjct: 241 DAVVQRFCQEVGVKRRVLKYGSGAPEELKKLDFFWERRGGGGGNPLRNKMKIHLASAS 298
>11_02_0028 +
7517196-7517206,7517256-7517312,7517423-7517503,
7518009-7518108,7518454-7518507,7519045-7519115,
7519248-7519455,7519647-7519700,7519934-7520025,
7520090-7520285,7521158-7521339,7521429-7521496,
7522848-7522920,7523010-7523071,7523155-7524079,
7524843-7525133,7525601-7525871
Length = 931
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 248 TDDKKTAVIAQKVVSEHNSWHRR 316
TD+ A +A + EHNSW R+
Sbjct: 377 TDNDAAASLAHDAILEHNSWERQ 399
>05_05_0342 - 24231924-24232178,24232271-24232653,24232778-24232790
Length = 216
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +2
Query: 83 LNSVIKKCPVLTLTQFTLKN--SRMNSEKLKKLQSQVRI-GGKGTPRRKKKVVHVTAATD 253
L + K V +LT ++K S M + +KL+++ GK P +KKK +HV A
Sbjct: 140 LMKAMNKLAVASLTSTSVKEIVSSMTTVANEKLKAEKAADAGKKKPGQKKKRLHVNKAEG 199
Query: 254 DK 259
K
Sbjct: 200 QK 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,735,644
Number of Sequences: 37544
Number of extensions: 301917
Number of successful extensions: 863
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -