Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18p04
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...   131   3e-31
Z81113-4|CAB03281.2|  388|Caenorhabditis elegans Hypothetical pr...    31   0.77 
U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    31   0.77 
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    30   1.0  
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.      29   3.1  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    29   3.1  
Z81576-3|CAB04641.1|  534|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score =  131 bits (317), Expect = 3e-31
 Identities = 61/95 (64%), Positives = 75/95 (78%), Gaps = 2/95 (2%)
 Frame = +3

Query: 291 VNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGP 470
           V  IPGIEEVNMIK+DGTVIHFNNPK Q S+ ANTF++TG  +NKQ TEMLPGIL+QLGP
Sbjct: 55  VTNIPGIEEVNMIKDDGTVIHFNNPKVQTSVPANTFSVTGSADNKQITEMLPGILNQLGP 114

Query: 471 DGLNRLKRIASSVA--APKPLEEDDEVPNLVGNFD 569
           + L  LK++A++V    P    ED++VP LVG+FD
Sbjct: 115 ESLTHLKKLANNVTKLGPDGKGEDEDVPELVGDFD 149



 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 30/44 (68%), Positives = 37/44 (84%), Gaps = 3/44 (6%)
 Frame = +2

Query: 140 NSRMNSEKLKKLQSQ---VRIGGKGTPRRKKKVVHVTAATDDKK 262
           +S+  +E++KKLQ+Q   VRIGGKGTPRRKKKV+H TAA DDKK
Sbjct: 2   DSKAIAERIKKLQAQQEHVRIGGKGTPRRKKKVIHKTAAADDKK 45


>Z81113-4|CAB03281.2|  388|Caenorhabditis elegans Hypothetical
           protein T03F6.4 protein.
          Length = 388

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 289 DNFLSDDCSFF-VICGRSNVNNLLLASRCAL 200
           DNF +D  +FF  +CGR  + +LLL S+  L
Sbjct: 169 DNFFADCLTFFDKVCGRVEIKSLLLCSKTIL 199


>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 456 SQLGPDGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFD 569
           S+ G  G +RL   A+  A P  ++   ++PNL  NFD
Sbjct: 203 SEAGSTGKDRLLVTAAVAAGPATIDAGYDIPNLAPNFD 240


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 257 KKTAVIAQKVVSEHNSWHRRGKYDQRGR 340
           K  ++I+  V + H++WH  G  D RGR
Sbjct: 31  KSKSIISGDVNAHHSAWHSEGSEDTRGR 58


>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
          Length = 1751

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 245 ATDDKKTAVIAQKVVSEHNSW 307
           ATD KKT  + QK++SEH  +
Sbjct: 443 ATDAKKTVTMLQKLISEHQKY 463


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
           anchorage protein1 protein.
          Length = 8545

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 245 ATDDKKTAVIAQKVVSEHNSW 307
           ATD KKT  + QK++SEH  +
Sbjct: 443 ATDAKKTVTMLQKLISEHQKY 463


>Z81576-3|CAB04641.1|  534|Caenorhabditis elegans Hypothetical
           protein R10E8.4 protein.
          Length = 534

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +3

Query: 366 KAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSVAAPKPLEEDDEV 545
           K +  L  N F +T   +N         ILS L PD L+ +K   S + + + L++  + 
Sbjct: 125 KREILLKVNEFVLTVPSKNGHVAS----ILSLLDPDALSAVKLNTSEMMSEQLLDQLSKF 180

Query: 546 PN 551
           PN
Sbjct: 181 PN 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,743,115
Number of Sequences: 27780
Number of extensions: 268852
Number of successful extensions: 787
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)