Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18p03
(219 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0007 - 13875735-13875826,13876217-13877465 31 0.13
11_04_0178 - 14552650-14553293,14557492-14557603 28 0.89
06_03_0048 + 15959234-15959590,15959973-15960314 27 2.7
08_02_0117 + 12767502-12767588,12768846-12768908,12769299-12770741 26 4.7
06_02_0349 + 15032131-15033117 26 4.7
05_06_0239 + 26627720-26627902,26628349-26628519 26 4.7
05_03_0491 + 14682895-14683365,14684127-14684656,14684739-14685213 26 4.7
10_08_0391 + 17486109-17486210,17487032-17487129,17487331-174873... 25 6.3
02_04_0454 + 23064081-23064139,23064297-23064366,23064553-230658... 25 6.3
02_02_0556 - 11444512-11445577,11445730-11446007 25 6.3
10_08_0721 - 20103490-20103867,20103892-20104284 25 8.3
10_08_0710 + 20070655-20070990,20071074-20071469 25 8.3
03_06_0124 - 31830797-31831371,31831510-31831532,31832143-318322... 25 8.3
01_06_1397 - 37017468-37017561,37017763-37017836,37019128-370191... 25 8.3
>02_03_0007 - 13875735-13875826,13876217-13877465
Length = 446
Score = 31.1 bits (67), Expect = 0.13
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +1
Query: 40 SVLFDEVIMSLPYGPPQPVSPLIRGLRFAFL 132
S D IM LP PP + PL GLR+AFL
Sbjct: 292 SETLDLPIMELPPRPPLELKPLPPGLRYAFL 322
>11_04_0178 - 14552650-14553293,14557492-14557603
Length = 251
Score = 28.3 bits (60), Expect = 0.89
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 52 DEV-IMSLPYGPPQPVSPLIRGLRFAFL 132
DE+ IM LP PP + PL GL +AFL
Sbjct: 187 DELPIMELPPRPPLELKPLPEGLCYAFL 214
>06_03_0048 + 15959234-15959590,15959973-15960314
Length = 232
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 61 IMSLPYGPPQPVSPLIRGLRFAFL 132
I+ P PP + PL +GLR+AFL
Sbjct: 172 IIEPPPRPPIALKPLPQGLRYAFL 195
>08_02_0117 + 12767502-12767588,12768846-12768908,12769299-12770741
Length = 530
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 52 DEVIMSLPYGPPQPVSPLIRGLRFAFLIAG 141
D IM P PP + PL LR+AFL G
Sbjct: 449 DLPIMEPPPRPPLELKPLPPSLRYAFLHNG 478
>06_02_0349 + 15032131-15033117
Length = 328
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -2
Query: 98 ETGCGGPYGKDMIT-SSNKTLK 36
+ GCG PY ++M+T + N TL+
Sbjct: 44 DDGCGSPYYRNMLTCADNATLR 65
>05_06_0239 + 26627720-26627902,26628349-26628519
Length = 117
Score = 25.8 bits (54), Expect = 4.7
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +1
Query: 13 DRSPLKLHFSVLFDEVIMSLPYGPPQPVSPLIRGLRFAFLIAGIIYARGKQKLY 174
DR + +VL+D M PY PP+ +PLI G A G++ + ++LY
Sbjct: 11 DRQFNRWEKTVLWD---MVEPYRPPRSFAPLI-GTYVAAFYTGVVASAITEQLY 60
>05_03_0491 + 14682895-14683365,14684127-14684656,14684739-14685213
Length = 491
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1
Query: 181 MEASYREEEAKKK 219
ME SYREEEA++K
Sbjct: 1 METSYREEEARRK 13
>10_08_0391 +
17486109-17486210,17487032-17487129,17487331-17487361,
17487655-17487707,17489254-17489402,17489828-17489898,
17489988-17490131,17490249-17490309,17492180-17492265,
17492839-17492926,17494012-17494142,17494266-17494394
Length = 380
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 87 WRTIRQRHDNFIE*NAK 37
W I QR+DN E NAK
Sbjct: 333 WEEIAQRYDNLFERNAK 349
>02_04_0454 +
23064081-23064139,23064297-23064366,23064553-23065815,
23065946-23066515
Length = 653
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 164 CLPRAYIIPAIKKANLKPLINGETGCGGPYGKDMI 60
CL + + P + K L + E+GCGG G D+I
Sbjct: 37 CLYQLHKFPLLSKCLLLQALCAESGCGG-NGGDVI 70
>02_02_0556 - 11444512-11445577,11445730-11446007
Length = 447
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 82 PPQPVSPLIRGLRFAFL 132
PP + PL +G+R+AFL
Sbjct: 256 PPHELKPLPQGIRYAFL 272
>10_08_0721 - 20103490-20103867,20103892-20104284
Length = 256
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 94 VSPLIRGLRFAFLIAGIIYARGKQKLYNKMEASYREEEAKKK 219
VSP +R A I G+ Y ++ ++NK E KK
Sbjct: 15 VSPFAIRVRIALNIKGVSYEYVEEDIFNKSELLLTSNPVHKK 56
>10_08_0710 + 20070655-20070990,20071074-20071469
Length = 243
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +1
Query: 97 SPLIRGLRFAFLIAGIIYARGKQKLYNKMEASYREEEAKKK 219
SP + +FA G+ Y ++ L+NK E KK
Sbjct: 19 SPYVLRAKFALSFKGLSYENVEEDLHNKSELLLSSNPVHKK 59
>03_06_0124 -
31830797-31831371,31831510-31831532,31832143-31832271,
31833287-31834842
Length = 760
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +1
Query: 49 FDEVIMSLPYGPPQPVSPLIRGLRFAFLIAGIIYA 153
+ + +SLP P SP +G+++ +++AG++ A
Sbjct: 274 YKRIGVSLPEPPNALPSPSKKGVKWKYVLAGVLAA 308
>01_06_1397 -
37017468-37017561,37017763-37017836,37019128-37019193,
37019543-37019623,37019735-37019943,37020096-37020192,
37020497-37020514,37020597-37020727,37021040-37021088,
37021450-37021539,37021616-37021721,37021815-37021885,
37021963-37022037,37022059-37022120,37022677-37022887,
37023599-37024069,37024387-37024719
Length = 745
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +1
Query: 10 FDRSPLKLHFSVLFDEVIMSLPYGP 84
FD + L+ F ++++ ++ LPY P
Sbjct: 410 FDENLLRKVFELMYENELLDLPYAP 434
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,464,175
Number of Sequences: 37544
Number of extensions: 88413
Number of successful extensions: 244
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -