Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18p03
         (219 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    19   6.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    19   9.2  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              19   9.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    19   9.2  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 73  PYGPPQPVSP 102
           PYG  +P+SP
Sbjct: 324 PYGYVKPISP 333


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 18.6 bits (36), Expect = 9.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 169 LYNKMEASYR 198
           LYN M A YR
Sbjct: 315 LYNVMSAKYR 324


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 18.6 bits (36), Expect = 9.2
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = -2

Query: 95  TGCGGPYGKDMITSSNKTLKC 33
           T C      D+   S K LKC
Sbjct: 102 TECSAISDADLAVKSAKLLKC 122


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 18.6 bits (36), Expect = 9.2
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 179 KWKHRIEKKK 208
           KW+  IEK+K
Sbjct: 867 KWRGAIEKRK 876


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,398
Number of Sequences: 438
Number of extensions: 877
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3281070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)