Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18p02
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    28   0.93 
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   2.2  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   5.0  

>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 525 CFSKVRIAWWVVYLMVMTSIDTTV*FPILKH 433
           C + V IA    YL+V+ S +T + +P++KH
Sbjct: 81  CSTIVHIALCAAYLIVIDSRNTVLSYPLMKH 111


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 89  MLCIIFFIFYFVE*TSNLSRGSIVRLHFAFSILNYYF 199
           M+C+    +   E  SN  +GSI+ L +  S+L + F
Sbjct: 842 MICVFLLTYVHSEGKSNYFKGSILVLAYLVSMLGFTF 878


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 535 SCFMFFEGTYSLVGGLPNGYDFHRHHSLIP 446
           S  MFF+  Y + G L    DF R HS  P
Sbjct: 579 SQLMFFKNVYWISGLLDQLEDFKRSHSFSP 608


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,686
Number of Sequences: 5004
Number of extensions: 48257
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)