Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18p02
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0711 + 19666277-19666283,19666836-19666954,19667068-196672...    29   3.9  
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047...    28   6.8  
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644...    27   8.9  

>09_04_0711 +
           19666277-19666283,19666836-19666954,19667068-19667277,
           19667362-19667510,19667588-19667759,19668323-19668415,
           19668522-19668661,19668752-19668851
          Length = 329

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/60 (23%), Positives = 26/60 (43%)
 Frame = -1

Query: 493 GLPNGYDFHRHHSLIPDPQARSPFSRVRRVNYPTDTAH*VSRRIFSVGRVSDPVVDSAKH 314
           GLPN +DF +  +L+ DP  +    ++      T  A  + +     G    P +D  ++
Sbjct: 27  GLPNPFDFSQFSNLLNDPSIKEMAEQIASDPVFTQMAEQLQKSAHVTGEQGGPALDPQQY 86


>12_02_0228 +
           15903452-15903812,15904153-15904202,15904615-15904713,
           15907146-15907415,15908045-15908125,15909033-15909599,
           15909677-15910053,15910326-15911613
          Length = 1030

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 458 QSDSRSSSTVAVLKGSTSKLSHRHSPLSFSPDLLSGSRFRSGGR 327
           Q  S+SSS  ++     SK +   +P SFSP   S S F   G+
Sbjct: 758 QFSSQSSSESSLAGQDKSKAASSSAPFSFSPQFGSTSPFAGQGK 801


>01_01_0827 +
           6443319-6446085,6446317-6446407,6446502-6448017,
           6448164-6448243,6449045-6449129,6449221-6449312,
           6449388-6449456,6449544-6449580,6449662-6449744,
           6450427-6450873,6450978-6451014,6451101-6451158,
           6451243-6451382,6451610-6451675,6451794-6451908,
           6453261-6453299,6453482-6453543
          Length = 1927

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 452 DSRSSSTVAVLKGSTSKLSHRHSPLSFSPDLLSGSRFR 339
           D+  +  +  L  STS+L + H+    SP  L GSR R
Sbjct: 235 DNMPNGVLLDLNNSTSQLQNEHAKFVDSPARLFGSRIR 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,706,166
Number of Sequences: 37544
Number of extensions: 305022
Number of successful extensions: 507
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)