Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18p02
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   2.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.4  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   7.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.6  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 121 KIKNKKNYAKHVLVN 77
           K+KNKK  +KH+L N
Sbjct: 328 KVKNKKAGSKHLLQN 342


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 321 AESTTGSETRPTEKIRRETQ 380
           A  TTG+ T PT ++R+  Q
Sbjct: 252 AAMTTGTTTIPTRRLRKRRQ 271



 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 470 P*TPQSDSRSSSTVA 426
           P +PQSDS SSS  A
Sbjct: 442 PLSPQSDSSSSSRSA 456


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -1

Query: 130 LFNKIKNKKNYAKHVLVNNNSKNSITSLN 44
           + + + N  NY+ +   NNN K    ++N
Sbjct: 303 IISSLSNSCNYSNNYYNNNNYKKLYYNIN 331


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = -2

Query: 528 LCFSKVRIAWWVVYLMV 478
           +CF    + +W++YL +
Sbjct: 414 VCFVCFNLMYWIIYLHI 430


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = -2

Query: 528 LCFSKVRIAWWVVYLMV 478
           +CF    + +W++YL +
Sbjct: 414 VCFVCFNLMYWIIYLHI 430


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,263
Number of Sequences: 438
Number of extensions: 3395
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)