Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18o23
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0478 - 22587881-22588021,22588126-22588266,22588436-225886... 35 0.055
12_02_0967 - 24916352-24916402,24916662-24916717,24917602-249176... 33 0.22
03_01_0380 + 2955102-2955357,2955468-2956189 31 0.68
09_01_0128 + 1932721-1935181,1936099-1936256 30 1.2
03_06_0195 + 32256771-32258792 30 1.6
03_02_0502 - 8934646-8934834,8934974-8935121,8935228-8935304,893... 29 3.6
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 29 3.6
05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448... 28 4.8
05_04_0084 - 17788077-17789240 28 4.8
09_02_0401 - 8575886-8575935,8576518-8576617,8576798-8576959,857... 27 8.4
06_02_0353 + 15091731-15092189,15095192-15095253,15095312-15095369 27 8.4
03_06_0511 - 34425605-34425850,34426120-34426284,34426365-344266... 27 8.4
03_05_0151 - 21284751-21284800,21285422-21285521,21285702-212858... 27 8.4
>01_05_0478 -
22587881-22588021,22588126-22588266,22588436-22588643,
22589199-22589238,22589425-22589647,22590826-22590970,
22591053-22591156,22591298-22591396,22591506-22591684,
22591948-22592167
Length = 499
Score = 34.7 bits (76), Expect = 0.055
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Frame = +2
Query: 128 LKEVCEDAKVIYKKSHNTMTTQSRTCSGFSQYQNKYEIIEHNSHTNRTETKQGKRDFS-- 301
LK D ++ ++ T ++ + +EH+S T+ + + DF
Sbjct: 240 LKGEAPDEQLTKEQEDKKKETVQSVREALVSKKSDFRELEHDSETDDYPDDENEEDFDNR 299
Query: 302 IETEICILRRHYGNKRNKISDKTKSKYSIGGKDINNEEVKNDGSACGDNENKESTKSRK 478
+ ++I RR G+ R+ + K K K++ +D DNE+ + TKSRK
Sbjct: 300 MRSQILRKRRELGDIRSSETSKKTDKAHRKDKELPVHRSDDDND--DDNEDHQLTKSRK 356
>12_02_0967 -
24916352-24916402,24916662-24916717,24917602-24917685,
24917751-24918251,24918520-24919207
Length = 459
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 422 NDGSACGDNENKESTKSRKDVTRILLDNLKGLI-NCLIQNYLLENGANNQRKATVL 586
+ S C D++ ++TK RK+++R L + L+ NC + L G N K V+
Sbjct: 354 DSSSICSDDDRVKTTKERKEMSRQLSSYIIYLVFNCGVMCLLASQGNNPDEKVAVV 409
>03_01_0380 + 2955102-2955357,2955468-2956189
Length = 325
Score = 31.1 bits (67), Expect = 0.68
Identities = 26/129 (20%), Positives = 53/129 (41%)
Frame = +2
Query: 86 IDELLAEYTITMGKLKEVCEDAKVIYKKSHNTMTTQSRTCSGFSQYQNKYEIIEHNSHTN 265
I L A +T+++G++ E ++ S NT + +Y Y EH ++
Sbjct: 55 IRPLSANWTLSLGEIPEGSSSLLPPFEISANTKIVKD-VDGPSKKYIGPYTKKEHGTYLA 113
Query: 266 RTETKQGKRDFSIETEICILRRHYGNKRNKISDKTKSKYSIGGKDINNEEVKNDGSACGD 445
+ ++ R S + ++R H K+ K + + +NEE DG +
Sbjct: 114 VQQGRKQNRILSALGQDMMVRVHPDLKKKKKKNSNINPKDAASSSSDNEENSLDGESDSS 173
Query: 446 NENKESTKS 472
+E+ + + S
Sbjct: 174 DESSDDSGS 182
>09_01_0128 + 1932721-1935181,1936099-1936256
Length = 872
Score = 30.3 bits (65), Expect = 1.2
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Frame = +2
Query: 203 CSGFSQYQNKYEIIEHNS-HTNRTETKQGKRDFSIETEICILRRHYGNKRNKISDKTKSK 379
CSG + Q + I+ NS T + +R + E L RH G +K ++ K
Sbjct: 337 CSGVDKRQKHIDQIQTNSLGMQEKHTDKFERYANGSREKHFLDRHIGRGEDKQEKRSTLK 396
Query: 380 YSIGG-------KDINNEEVKNDGSACGDN 448
+I G KD+N +K+ CGD+
Sbjct: 397 PTIHGRDKHKNHKDVNKRAMKSVKFVCGDD 426
>03_06_0195 + 32256771-32258792
Length = 673
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 359 SDKTKSKYSIGGKDINNEEVKNDGSACGDNENKESTKSRKD 481
++ T+S + D ++E + +DGS C D E+K T++ D
Sbjct: 224 TESTESSHDEDDLDDDDESLDDDGSECFDEEDKIGTENPDD 264
>03_02_0502 -
8934646-8934834,8934974-8935121,8935228-8935304,
8935427-8935497,8935594-8935680,8935852-8936316,
8936406-8936880
Length = 503
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 266 RTETKQGKRDFSIETEICILRRHYGN 343
+TE+KQG R+F E EI I R H+ N
Sbjct: 258 KTESKQGDREFRAEVEI-ITRVHHRN 282
>02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 350 NKISDKTKSKYSIGGKDINNEEVKNDGSACGDNENKESTKSRKDVTRI 493
+ S+ K Y G KD+N + V+++GS + + K+ SRK TRI
Sbjct: 1536 DSFSEPLKKLY--GSKDVNGKGVRSNGSETSNRQPKDKGFSRK--TRI 1579
>05_05_0195 +
23142830-23143714,23144288-23144314,23144657-23144866,
23144976-23145242,23146290-23146376,23146495-23146553,
23147166-23147768,23148063-23148192,23148570-23149100,
23149636-23149743,23149911-23150456,23150957-23151079,
23151494-23151709
Length = 1263
Score = 28.3 bits (60), Expect = 4.8
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Frame = +2
Query: 161 YKKSHNTMTTQSRTCSGFSQYQNKYEII-EHNSHTNRTETKQGKRDFSIETEICILRR-- 331
++K T S T + S +YE I E+N+ + K +RDF + I+ +
Sbjct: 435 HQKLGGLKETISATEAAKSHALKEYENIKENNTIEIKRFDKDRRRDFVQMLKGFIVNQVS 494
Query: 332 ---HYGNKRNKISDKTKSKYSIGGKDINNEEVKNDGS 433
HY N K++D+TK K + +++ +N S
Sbjct: 495 YSDHYANMWAKVADETKVKLELSAAKMSHAPCRNAAS 531
>05_04_0084 - 17788077-17789240
Length = 387
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +2
Query: 365 KTKSKYSIGGKDINNEEVKNDGSACG---DNENKESTKSRKD 481
+ K K GKD+ + + DG G D E K+ KS+K+
Sbjct: 197 REKGKKGKKGKDVGKKRKREDGGGGGGAQDGEGKDGKKSKKE 238
>09_02_0401 -
8575886-8575935,8576518-8576617,8576798-8576959,
8577106-8577253,8577436-8577458,8577615-8577685,
8577792-8577878,8578039-8578470,8578574-8579009
Length = 502
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 266 RTETKQGKRDFSIETEICILRRHYGN 343
+TE+KQG R+F E +I I R H+ N
Sbjct: 234 KTESKQGDREFRAEADI-ITRVHHRN 258
>06_02_0353 + 15091731-15092189,15095192-15095253,15095312-15095369
Length = 192
Score = 27.5 bits (58), Expect = 8.4
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +2
Query: 197 RTCSGFSQYQNKYEIIEHNSHTNRTETKQGKR--DFSIE-TEICILRRHYGNKRNKISDK 367
+TC G + K +++ + TN ++ ++GK+ D S + ++ C GN+ + S
Sbjct: 15 QTCKGTLVQKYKVKVVADDPGTNSSKDEEGKQSPDGSAQSSDKCATDGSLGNQGDN-SQG 73
Query: 368 TKSKYSIGGKDINNEEVKNDGSA 436
G K + + V DG+A
Sbjct: 74 VHGVQGDGAKGVQDGGVNQDGNA 96
>03_06_0511 -
34425605-34425850,34426120-34426284,34426365-34426629,
34427805-34427884,34428051-34428149,34428387-34428644,
34429081-34429215
Length = 415
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 356 ISDKTKSKYSIGGKDINNEEVKNDGSACGDNENK 457
+ DKT KY+I G +N + + N+G NK
Sbjct: 22 VFDKTLYKYAILGCKVNADGIMNEGIISSSERNK 55
>03_05_0151 -
21284751-21284800,21285422-21285521,21285702-21285863,
21286010-21286157,21286286-21286362,21286519-21286589,
21286696-21286782,21286943-21287374,21287478-21287913
Length = 520
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 266 RTETKQGKRDFSIETEICILRRHYGN 343
+TE+KQG R+F E +I I R H+ N
Sbjct: 234 KTESKQGDREFRAEADI-ITRVHHRN 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,203,992
Number of Sequences: 37544
Number of extensions: 208865
Number of successful extensions: 692
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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