Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18o17
(530 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 42 4e-05
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 42 8e-05
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 42 8e-05
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 41 1e-04
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 40 3e-04
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 39 4e-04
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 39 5e-04
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 38 7e-04
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 38 0.001
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 38 0.001
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 36 0.003
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 36 0.004
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 35 0.007
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 35 0.007
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 35 0.007
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 35 0.009
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 34 0.012
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 34 0.012
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 34 0.012
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 33 0.027
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 33 0.035
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 33 0.035
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 32 0.046
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 32 0.061
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 31 0.081
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 31 0.081
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 31 0.14
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 31 0.14
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 31 0.14
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 31 0.14
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 31 0.14
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 31 0.14
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 30 0.19
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 30 0.19
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 30 0.19
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 30 0.25
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 29 0.33
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 29 0.33
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 29 0.43
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 29 0.43
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 29 0.57
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 28 0.76
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 27 1.3
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 27 1.3
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 27 1.7
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 27 2.3
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 27 2.3
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 3.0
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 26 4.0
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 26 4.0
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 25 5.3
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 25 7.0
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 7.0
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 7.0
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 25 7.0
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 7.0
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 9.3
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 42.3 bits (95), Expect = 4e-05
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +3
Query: 312 WKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECV 488
+ L+ F H ++V+C+ H ++ + TG DK LW + R + +GHT PV V
Sbjct: 454 YPLRVFAGHLSDVDCVTF-HPNSAYVLTGSSDKTCRLWDVHRGHSVRVFNGHTQPVTAV 511
Score = 34.7 bits (76), Expect = 0.009
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 378 NQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 497
N+ L + +D LW++ ++ L++ GHT PV V FG
Sbjct: 391 NKYLLSCSEDASARLWSVDTKTALVAYKGHTGPVWDVAFG 430
Score = 30.7 bits (66), Expect = 0.14
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 390 ATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 527
AT D+ LW+ L +GH + V+CV F + V GS
Sbjct: 437 ATASHDQTAQLWSCDHIYPLRVFAGHLSDVDCVTFHPNSAYVLTGS 482
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/73 (19%), Positives = 31/73 (42%)
Frame = +3
Query: 306 RSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVEC 485
R ++ F H V +A+ +A+ + ++LW IG + ++ GH +
Sbjct: 494 RGHSVRVFNGHTQPVTAVAIA-PDGHTMASADSEGLIHLWDIGTGRRIKTMRGHRGNIYS 552
Query: 486 VCFGHSEDLVCAG 524
+ F ++ +G
Sbjct: 553 LSFSRESTVLVSG 565
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 41.5 bits (93), Expect = 8e-05
Identities = 22/61 (36%), Positives = 28/61 (45%)
Frame = +3
Query: 318 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 497
L F H V +A H + + +GGDD KVN+W + L SL GH V F
Sbjct: 46 LDRFDGHDGPVRGIAF-HPTQPLFVSGGDDYKVNVWNYKSRKLLFSLCGHMDYVRVCTFH 104
Query: 498 H 500
H
Sbjct: 105 H 105
Score = 38.7 bits (86), Expect = 5e-04
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +3
Query: 336 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLV 515
H V H+ +L+ DD+ + +W ++C+ L+GH+ V C F SEDL+
Sbjct: 94 HMDYVRVCTFHHEYPWILSCS-DDQTIRIWNWQSRNCIAILTGHSHYVMCAAFHPSEDLI 152
Query: 516 CAGS 527
+ S
Sbjct: 153 VSAS 156
Score = 32.3 bits (70), Expect = 0.046
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +3
Query: 336 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSC--LMSLSGHTTPVECVCFGHSED 509
H VN A H + ++ + GDD+ V LW + + + GH V C F ++
Sbjct: 211 HDRGVNWCAF-HPTLPLILSAGDDRLVKLWRMTASKAWEVDTCRGHFNNVSCCLFHPHQE 269
Query: 510 LVCAGSQ 530
L+ + S+
Sbjct: 270 LILSASE 276
Score = 31.5 bits (68), Expect = 0.081
Identities = 10/50 (20%), Positives = 28/50 (56%)
Frame = +3
Query: 306 RSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMS 455
++W++ H NV+C + H +++ + +DK + +W + R++ + +
Sbjct: 245 KAWEVDTCRGHFNNVSC-CLFHPHQELILSASEDKTIRVWDLNRRTAVQT 293
Score = 25.0 bits (52), Expect = 7.0
Identities = 15/69 (21%), Positives = 29/69 (42%)
Frame = +3
Query: 318 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 497
L +F + + +A H + + T + ++ LW + L GH PV + F
Sbjct: 4 LTKFESRSSRAKGVAF-HPTQPWILTSLHNGRIQLWDYRMGTLLDRFDGHDGPVRGIAFH 62
Query: 498 HSEDLVCAG 524
++ L +G
Sbjct: 63 PTQPLFVSG 71
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 41.5 bits (93), Expect = 8e-05
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 384 VLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 497
+LA+G D V +W + ++ L +LSGHT P+ CV +G
Sbjct: 241 LLASGSKDNTVRIWNVKLRTLLFTLSGHTAPITCVRWG 278
Score = 35.9 bits (79), Expect = 0.004
Identities = 16/64 (25%), Positives = 26/64 (40%)
Frame = +3
Query: 336 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLV 515
H + ++ L TG D LW Q+ + ++ GHT V CV + ++
Sbjct: 133 HDGTIISAQFSPSTSSRLVTGSGDFTARLWDCDTQTPIATMKGHTNWVSCVAWAPDASII 192
Query: 516 CAGS 527
GS
Sbjct: 193 ATGS 196
Score = 25.8 bits (54), Expect = 4.0
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +3
Query: 336 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 479
H A + C+ G ++ + + DK + +W CL L GH V
Sbjct: 268 HTAPITCVRWGGQN--WIYSSSYDKTIRIWDAKDGKCLHILKGHAARV 313
Score = 25.0 bits (52), Expect = 7.0
Identities = 19/83 (22%), Positives = 32/83 (38%)
Frame = +3
Query: 282 LITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLS 461
LI + + + + + H+ VN + + +AT D V LW L +L
Sbjct: 370 LILWDPQKSTKPITKMHGHQKVVNHASFS-PDGRCIATASFDSSVRLWDGKTGKFLATLR 428
Query: 462 GHTTPVECVCFGHSEDLVCAGSQ 530
GH V + L+ + SQ
Sbjct: 429 GHVAAVYQCAWSTDSRLLVSSSQ 451
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 41.1 bits (92), Expect = 1e-04
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 327 FVAHKANVNCLAMG-HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHS 503
F H ++ L G H++ VLA+G DD +V LW + + GH++ + + F +
Sbjct: 141 FRGHGGVISALCFGKHQNTWVLASGADDSRVRLWDLNSSRSMAVFEGHSSVIRGLTFEPT 200
Query: 504 EDLVCAGSQ 530
+ +GS+
Sbjct: 201 GSFLLSGSR 209
Score = 36.3 bits (80), Expect = 0.003
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +3
Query: 282 LITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLS 461
L+T+ +++ AH+ V + + +N +LATGG + V +W I S
Sbjct: 84 LLTIYEIPSGRRIKSMKAHETPVITMTID-PTNTLLATGGAEGLVKVWDIAGAYVTHSFR 142
Query: 462 GHTTPVECVCFGHSED 509
GH + +CFG ++
Sbjct: 143 GHGGVISALCFGKHQN 158
Score = 35.1 bits (77), Expect = 0.007
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 336 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHT 470
H+ V + S Q LA+G D+ + +W + Q C+ +L GHT
Sbjct: 506 HRRGVWACSFNPFSRQ-LASGSGDRTIRIWNVDTQQCVQTLEGHT 549
Score = 31.1 bits (67), Expect = 0.11
Identities = 19/77 (24%), Positives = 33/77 (42%)
Frame = +3
Query: 297 ATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTP 476
+ R W ++ AH +VN + + K +++A+ DK + LW + L GH
Sbjct: 454 SNRAVWTIK---AHDRDVNAIQVS-KDGRIIASASQDKTIKLWDSSTGEVVGVLRGHRRG 509
Query: 477 VECVCFGHSEDLVCAGS 527
V F + +GS
Sbjct: 510 VWACSFNPFSRQLASGS 526
Score = 29.5 bits (63), Expect = 0.33
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +3
Query: 387 LATGGDDKKVNLWAIGRQ----SCLMSLSGHTTPVECVCFG 497
LATG D V LW + + C+ +GHT V V G
Sbjct: 379 LATGAKDNTVRLWNLNIEDNVYKCIHVFTGHTASVTAVALG 419
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 39.5 bits (88), Expect = 3e-04
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +3
Query: 318 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVC 491
L+ FV H+ +V+C++ H + LATG D +W + + + H +PV +C
Sbjct: 480 LRVFVGHQNDVDCVSF-HPNAAYLATGSSDHTTRMWDVRTGGTVRVFNAHHSPVSALC 536
Score = 29.9 bits (64), Expect = 0.25
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +3
Query: 390 ATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 527
AT D+ LW + + L GH V+CV F + + GS
Sbjct: 461 ATASHDQTARLWDVEHAAPLRVFVGHQNDVDCVSFHPNAAYLATGS 506
Score = 29.1 bits (62), Expect = 0.43
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 327 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLW 425
FV H + V L+ + N++L +GG D VN W
Sbjct: 567 FVKHSSIVYSLSFSY-DNKILVSGGADTDVNFW 598
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 39.1 bits (87), Expect = 4e-04
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 327 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLS 461
F+ HK V CL++ H S LA+GGDD + +W + C+ S
Sbjct: 375 FIGHKGRVRCLSV-HVSGNWLASGGDDGVLRIWEVMTGRCVWKCS 418
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 38.7 bits (86), Expect = 5e-04
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Frame = +3
Query: 294 EATRRSWKLQEF--VA----HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMS 455
+AT R W L F VA H + V CL L +G DK + +W C+
Sbjct: 292 DATIRLWNLATFQQVALLEGHSSGVTCLQFDQCK---LISGSMDKTIRIWNYRTSECISI 348
Query: 456 LSGHTTPVECVCFGHSEDLVCAGS 527
L GHT V C+ F L+ +GS
Sbjct: 349 LHGHTDSVLCLTF--DSTLLVSGS 370
Score = 36.3 bits (80), Expect = 0.003
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +3
Query: 336 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLV 515
H VN + + VL+ G DD + +W++ +CL + S H PV+ + S
Sbjct: 391 HTGPVNSVRIIRDRGLVLS-GSDDSTIKIWSLETNTCLHTFSAHIGPVQSLALADSRLFS 449
Query: 516 CA 521
C+
Sbjct: 450 CS 451
Score = 31.1 bits (67), Expect = 0.11
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +3
Query: 336 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 494
H V CL + +LA+G D + LW + + L GH++ V C+ F
Sbjct: 272 HSDGVMCLQL---VRNILASGSYDATIRLWNLATFQQVALLEGHSSGVTCLQF 321
Score = 24.6 bits (51), Expect = 9.3
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +3
Query: 318 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 497
L F AH V LA+ ++ L + D + W I ++ C+ +L GH V +
Sbjct: 427 LHTFSAHIGPVQSLAL---ADSRLFSCSLDGTIKQWDIEKKKCVHTLFGHIEGVWEIAAD 483
Query: 498 H 500
H
Sbjct: 484 H 484
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 38.3 bits (85), Expect = 7e-04
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Frame = +3
Query: 270 RNNLLIT--MEATRRSWKL------QEFVA-HKANVNCLAMGHKSNQVLATGGDDKKVNL 422
R N+L + ++ + R+W L + F A + +C+A+ V A D ++ +
Sbjct: 392 RGNVLFSSSLDGSVRAWDLIRYRNFRTFTAPSRVQFSCIAVDPSGEIVCAGSQDSFEIFM 451
Query: 423 WAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 527
W++ L +L+GH PV + F S L+ +GS
Sbjct: 452 WSVQTGQLLETLAGHEGPVSSLSFNSSGSLLASGS 486
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 381 QVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 527
Q + TG DD K+ +W + C+++ + HT+ V +CF +++ + S
Sbjct: 352 QRIITGADDGKIKVWDMNSGFCIVTFTQHTSAVSGLCFSKRGNVLFSSS 400
Score = 29.5 bits (63), Expect = 0.33
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 327 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHT-TPVECVCFGHS 503
F H + V+ L + N VL + D V W + R + + + C+ S
Sbjct: 377 FTQHTSAVSGLCFSKRGN-VLFSSSLDGSVRAWDLIRYRNFRTFTAPSRVQFSCIAVDPS 435
Query: 504 EDLVCAGSQ 530
++VCAGSQ
Sbjct: 436 GEIVCAGSQ 444
Score = 28.7 bits (61), Expect = 0.57
Identities = 21/81 (25%), Positives = 36/81 (44%)
Frame = +3
Query: 285 ITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSG 464
I M + + L+ H+ V+ L+ + S +LA+G DK V +W I +S ++
Sbjct: 449 IFMWSVQTGQLLETLAGHEGPVSSLSF-NSSGSLLASGSWDKTVRIWDIFSRSGIVEPLP 507
Query: 465 HTTPVECVCFGHSEDLVCAGS 527
+ V + F VC S
Sbjct: 508 IPSDVLSLAFHPDGKEVCVAS 528
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 37.5 bits (83), Expect = 0.001
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 336 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQS---CLMSLSGHTTPVECVCFGHSE 506
H+ V C+A N LAT DK V +W CL L HT V+ V + +E
Sbjct: 377 HENEVKCIAWSCNGNY-LATCSRDKSVWIWEATEDDEFDCLAVLQEHTQDVKVVTWHPTE 435
Query: 507 DLVCAGS 527
DL+ +GS
Sbjct: 436 DLLVSGS 442
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 37.5 bits (83), Expect = 0.001
Identities = 19/69 (27%), Positives = 37/69 (53%)
Frame = +3
Query: 321 QEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH 500
Q+F A +V C+ ++++ +G D+ V++W + + L L GH+ V C+ F
Sbjct: 215 QDFRATLDSVYCVQY---DDEIMVSGSKDRTVSVWDVNSRFILYKLYGHSGSVLCLDFCR 271
Query: 501 SEDLVCAGS 527
+L+ +GS
Sbjct: 272 RRNLLVSGS 280
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 36.3 bits (80), Expect = 0.003
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = +3
Query: 318 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 497
+++F AH + L H LAT DK V +W + L SL GH+ V C+
Sbjct: 325 VKQFQAHSEYITSLDFSHPFG-TLATASTDKTVKVWDMAGVVYLGSLKGHSDYVSCLAI- 382
Query: 498 HSEDLVCAGS 527
+ + GS
Sbjct: 383 -QDSFIATGS 391
Score = 33.9 bits (74), Expect = 0.015
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +3
Query: 333 AHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSL 458
+H A V LA+ S+ VL TG DDK V W I C+ +L
Sbjct: 433 SHTAPVTALALS--SDDVLITGADDKTVRQWDIVTGRCIQTL 472
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 387 LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGSQ 530
L T GDD + +W ++C+ L GHT V F ++ +GS+
Sbjct: 201 LITAGDDNLIKVWDYQTKACVRILEGHTNNVSFAFFHSKFPIIISGSE 248
Score = 24.6 bits (51), Expect = 9.3
Identities = 15/63 (23%), Positives = 24/63 (38%)
Frame = +3
Query: 336 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLV 515
H NV+ A H ++ +G +D V +W S + S + C+ LV
Sbjct: 227 HTNNVS-FAFFHSKFPIIISGSEDGTVKIWHTLSYSLIKSYNFSLDRAWCIAQNKDNGLV 285
Query: 516 CAG 524
G
Sbjct: 286 TVG 288
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 35.1 bits (77), Expect = 0.007
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 387 LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 527
L TG +D+++ LW + Q SGH + + F H+ + +GS
Sbjct: 375 LVTGTEDRQIKLWDLSTQKVRYVFSGHEQDIYSLDFSHNGRFIVSGS 421
Score = 27.9 bits (59), Expect = 1.00
Identities = 13/67 (19%), Positives = 28/67 (41%)
Frame = +3
Query: 327 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSE 506
F H+ ++ L H + + + +G D+ LW + C++ L V + ++
Sbjct: 398 FSGHEQDIYSLDFSH-NGRFIVSGSGDRTARLWDVETGQCILKLE-IENGVTAIAISPND 455
Query: 507 DLVCAGS 527
+ GS
Sbjct: 456 QFIAVGS 462
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/45 (24%), Positives = 18/45 (40%)
Frame = +3
Query: 393 TGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 527
+G D+ + W + ++ GH V VCF +GS
Sbjct: 555 SGSKDRSMQFWDLQTGQSYLTCQGHKNSVISVCFSPDGRQFASGS 599
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 35.1 bits (77), Expect = 0.007
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 354 CLAMGHKSNQV-LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 527
C A S Q+ LATG D V LW + + L+ L GH V V F S D + + S
Sbjct: 226 CQAWDADSEQLTLATGAADNTVCLWKASQSTPLLRLEGHLARVGRVAFHPSGDYLVSAS 284
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 378 NQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAG 524
N+ +AT G D V LW S + S+ GH V V G+ + + +G
Sbjct: 405 NRFIATSGYDGCVKLWNPLNCSLIKSMVGHEEKVMSV-DGYGDRFISSG 452
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 35.1 bits (77), Expect = 0.007
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = +3
Query: 327 FVAHKANVNCLAMG--HKSNQV--LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 494
+ H V C + K +V + TG D + W + C+ +L GHT V+C+
Sbjct: 81 YKGHSGPVTCCQIESLRKDGKVRHIYTGSWDHTIKKWNVSTGECVETLIGHTDYVKCLLL 140
Query: 495 GHSEDLVCAGS 527
E L+ +GS
Sbjct: 141 LEEEGLLLSGS 151
Score = 29.5 bits (63), Expect = 0.33
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 327 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAI 431
F H++NV CL + ++ L T DK V W++
Sbjct: 218 FWGHQSNVYCLLFDPQDSEALWTASADKTVREWSL 252
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 34.7 bits (76), Expect = 0.009
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = +3
Query: 315 KLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 494
++ + AH +N C+ N+ LA GG D +LW C S++ P+ + F
Sbjct: 186 RVYDIKAHNSNCFCIEFS-PDNRHLAIGGADAITSLWDPQELICERSITRMDYPIRTLSF 244
Query: 495 GHSEDLVCAGSQ 530
+ + +GS+
Sbjct: 245 SYDSRYLASGSE 256
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 34.3 bits (75), Expect = 0.012
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +3
Query: 315 KLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 494
++ + V H NV + + +L T D + LW++ Q CL S H+ V +
Sbjct: 208 RITDLVGHTDNVRDILISDDGRTIL-TASSDATIKLWSLRAQKCLFSFIAHSDSVWALYS 266
Query: 495 GHSE 506
H +
Sbjct: 267 EHPD 270
Score = 28.3 bits (60), Expect = 0.76
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 375 SNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 479
+N ++A GG K + LW + + L GHT V
Sbjct: 185 NNNIIANGGLQKDIQLWDCVSKKRITDLVGHTDNV 219
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 34.3 bits (75), Expect = 0.012
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = +3
Query: 318 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 497
L E H + V L H + Q++A+ G+D+ + +W G++ CL ++ TT V V
Sbjct: 208 LYELHGHTSFVYSLTYIH-NQQLIASCGEDRTIRIWK-GKE-CLQCITLPTTSVWSVSSL 264
Query: 498 HSEDLVCAGS 527
+ DLVC S
Sbjct: 265 PNGDLVCGSS 274
Score = 31.9 bits (69), Expect = 0.061
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +3
Query: 336 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLV 515
H++N+ C A S ++ TG D +WA+G+ C L GH + V V ED+
Sbjct: 97 HESNI-CSASALNSETII-TGSWDSTARVWALGQ--CKYVLKGHQSSVWAV-LALGEDIF 151
Query: 516 CAGS 527
GS
Sbjct: 152 ITGS 155
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 34.3 bits (75), Expect = 0.012
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 378 NQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 527
++ LA+ DDK + +W ++ + L GHT V + F L+ +GS
Sbjct: 108 SKYLASASDDKTIRIWDFEKRCSVRCLKGHTNYVSSIDFNPLGTLLVSGS 157
Score = 28.7 bits (61), Expect = 0.57
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 384 VLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCA 521
+L +G D+ V +W + +CL L H+ P+ V ++ +CA
Sbjct: 152 LLVSGSWDETVRIWNLQDGTCLRMLPAHSEPIISVSIS-ADGTLCA 196
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 33.1 bits (72), Expect = 0.027
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +3
Query: 384 VLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 527
+L +G D + +W + CL L GH+ + V + ++ +GS
Sbjct: 519 ILVSGSYDSSIRIWRVSTGECLYHLRGHSLRIYSVLYEPERNICISGS 566
Score = 29.1 bits (62), Expect = 0.43
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 387 LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECV 488
L +G DK V +W I + C GH + + C+
Sbjct: 404 LVSGSIDKTVRVWNIEKAKCTHIFRGHISIIRCL 437
Score = 24.6 bits (51), Expect = 9.3
Identities = 8/28 (28%), Positives = 14/28 (50%)
Frame = +3
Query: 384 VLATGGDDKKVNLWAIGRQSCLMSLSGH 467
+ +G DK + +W + +C L GH
Sbjct: 561 ICISGSMDKSIRVWDLSTGTCKYVLEGH 588
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 32.7 bits (71), Expect = 0.035
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 336 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGR-QSCLMSLSGHTTPVECVCF 494
H ++CL S +L +G D ++ +W + +S L + GH P+ + F
Sbjct: 265 HTKGISCLRFFPISGHLLLSGSMDNQIKIWEVYHDRSLLRTFQGHARPIRDLSF 318
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 32.7 bits (71), Expect = 0.035
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +3
Query: 273 NNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLM 452
N ++ +A S + + AH ++CL++ +ATG D+ V LW S M
Sbjct: 361 NGIVYYCDARNLSKSVWQLQAHDGPISCLSVNPSVPSFVATGSTDRVVKLWNTSDSSPKM 420
Query: 453 SLS 461
+S
Sbjct: 421 VVS 423
Score = 32.3 bits (70), Expect = 0.046
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 336 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECV-CFGHSEDL 512
H V L+ ++ +L +G D + LW + +C+ S + H+ V C+ + + +
Sbjct: 253 HTDAVLALSSNRNAHNLLVSGSADTTLKLWDLSTCNCVKSFTYHSDKVSCLDWYSKAPSV 312
Query: 513 VCAGS 527
+ +GS
Sbjct: 313 LLSGS 317
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 32.3 bits (70), Expect = 0.046
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = +3
Query: 318 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 497
L+ AH+ V+ +N +G DDK V +W + + LSGH V +
Sbjct: 116 LRALDAHQFPVHVTQFCPYANTTFLSGSDDKTVKVWDLSTGAVQYDLSGHEDYVRTASWM 175
Query: 498 HSEDLVCAG 524
+ LV G
Sbjct: 176 SATRLVSGG 184
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/64 (21%), Positives = 26/64 (40%)
Frame = +3
Query: 333 AHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDL 512
+H ++ + + V++ GG KV GRQ+ LS H + C+
Sbjct: 205 SHGEAIDVVLPMQSGSTVISAGGPSIKVWDLVAGRQTPTKKLSNHQKSITCLAMNSENTR 264
Query: 513 VCAG 524
+ +G
Sbjct: 265 LLSG 268
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 336 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAI 431
H+ ++ CLAM ++ ++L +GG D V ++ I
Sbjct: 249 HQKSITCLAMNSENTRLL-SGGLDGHVKIYNI 279
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 31.9 bits (69), Expect = 0.061
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 387 LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECV 488
L TG D+ V +W + C GHT+ + C+
Sbjct: 459 LVTGSTDRTVRVWDLRTGECKQVFYGHTSTIRCI 492
Score = 29.1 bits (62), Expect = 0.43
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 375 SNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHS 503
S Q + G D K+ +W + L +L GH+ V V F +
Sbjct: 628 SRQQCISAGTDAKIRIWNLESGELLQTLHGHSNLVSQVTFNQN 670
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 31.5 bits (68), Expect = 0.081
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 333 AHKANVNCLAMGHKSNQVLATGGDDKKVNLWAI-GRQSCLMSLSGHTTPVECVCFGHSED 509
AH ++ +A ++ +LAT DK + LW + L +L GH V + F E+
Sbjct: 279 AHSGPIHSVAFNPHNDFILATCSTDKTIALWDLRNLNQRLHTLEGHEDIVTKISFSPHEE 338
Query: 510 LVCAGS 527
+ A +
Sbjct: 339 PILAST 344
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 31.5 bits (68), Expect = 0.081
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +3
Query: 309 SWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLS-GHTTPVEC 485
+WK NV C+ H +N++L G ++L ++ ++ G+ P
Sbjct: 34 NWKTHIIWRSLKNVKCIDSFHGNNEILGAGSSTGNISLLSVKHPEFQAVVTPGYARPCNS 93
Query: 486 VCFGHSEDLV 515
+ F +E LV
Sbjct: 94 LAFSETEHLV 103
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 30.7 bits (66), Expect = 0.14
Identities = 14/70 (20%), Positives = 30/70 (42%)
Frame = +3
Query: 318 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 497
+ E+ H + L + + S + + GGD K + +W + L GH + + +
Sbjct: 49 IHEYAGHGHEILDLDLVYDSTKFASCGGD-KFIQVWDVNTGKVDRRLGGHLAQINTIRYN 107
Query: 498 HSEDLVCAGS 527
++ +GS
Sbjct: 108 EDSSILASGS 117
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 369 HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV--ECVCFGHSEDLVCA 521
++S ++ +G +D KV LW + ++ + S S TP+ + C +D + A
Sbjct: 233 NQSETIVFSGSEDGKVYLWDLENETQITSTSVVGTPIVTDISCHPTMDDFIIA 285
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 339 KANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGH 467
K +N + VLA G +++ V LW + +C+ +GH
Sbjct: 14 KEPINVVKYNRTGKYVLAAG-NERVVRLWNVKSGACIHEYAGH 55
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 30.7 bits (66), Expect = 0.14
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 378 NQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHS 503
+QVLA+GGDD K+ +W + +M P+ GHS
Sbjct: 94 DQVLASGGDDSKIMIWKVPEDYTVMEPYEDVHPI-AELKGHS 134
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 30.7 bits (66), Expect = 0.14
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +3
Query: 333 AHKANVNCLAMGHKSNQVLATGGDDKKVNLWAI-GRQSCLMSLSGHTTPVECVCFG-HSE 506
AH +N +A+ ++ +LAT DK V LW + L +L GH V + + H E
Sbjct: 279 AHSKAINAVAINPFNDYLLATASADKTVALWDLRNPYQRLHTLEGHEDEVYGLEWSPHDE 338
Query: 507 DLVCAGS 527
++ + S
Sbjct: 339 PILASSS 345
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 387 LATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 479
LATG +D+ + LW + QS S + +P+
Sbjct: 198 LATGAEDQVICLWDVQTQSFTSSETKVISPI 228
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 30.7 bits (66), Expect = 0.14
Identities = 18/70 (25%), Positives = 29/70 (41%)
Frame = +3
Query: 321 QEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH 500
+ H V+ A+ S+ L+ D K + LW + + C GHT+ V V
Sbjct: 57 RRLTGHSHFVSDCALSFDSHYALSASWD-KTIRLWDLEKGECTHQFVGHTSDVLSVSISP 115
Query: 501 SEDLVCAGSQ 530
V +GS+
Sbjct: 116 DNRQVVSGSR 125
Score = 27.9 bits (59), Expect = 1.00
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Frame = +3
Query: 336 HKANVNCLAMG-HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDL 512
H V+C+ + N + G DK V +W + S S GHT V V L
Sbjct: 147 HSDWVSCVRFSPNPDNLTFVSAGWDKAVKVWDLETFSLRTSHYGHTGYVSAVTISPDGSL 206
Query: 513 VCAGSQ 530
+G +
Sbjct: 207 CASGGR 212
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 30.7 bits (66), Expect = 0.14
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 387 LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 527
LATG +D+++ +W I ++ L+GH + + F + +GS
Sbjct: 349 LATGVEDQQIRIWDIAQKRVYRLLTGHEQEIYSLDFSKDGKTLVSGS 395
Score = 25.4 bits (53), Expect = 5.3
Identities = 14/69 (20%), Positives = 26/69 (37%)
Frame = +3
Query: 321 QEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH 500
Q F HK + + + +++ G D+ + W+ ++L GH V V
Sbjct: 506 QTFTGHKDFILSVTVSPDGKWIIS-GSKDRTIQFWSPDSPHSQLTLQGHNNSVISVAVSP 564
Query: 501 SEDLVCAGS 527
+ GS
Sbjct: 565 NGHCFATGS 573
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 30.7 bits (66), Expect = 0.14
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 312 WKLQEFVA-HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 479
W L ++ H V C+ + NQ TG D+ + +W + ++L+GH V
Sbjct: 153 WTLMRVISGHLGWVRCVDV-EPGNQWFCTGAGDRTIKIWDLASGVLKLTLTGHIATV 208
Score = 30.3 bits (65), Expect = 0.19
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +3
Query: 318 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 497
++ + H + V L + H + VL T G D +W + + + LSGH + V +
Sbjct: 240 IRHYHGHLSGVYALKL-HPTLDVLVTAGRDAVARVWDMRTRQNVHVLSGHKSTVASLAVQ 298
Query: 498 HSEDLVCAGS 527
+ V GS
Sbjct: 299 EFDPQVVTGS 308
Score = 24.6 bits (51), Expect = 9.3
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +3
Query: 336 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSED-L 512
H A V LA+ + + L + G+DK V W + + GH + V + + D L
Sbjct: 204 HIATVRGLAVSPR-HPYLFSCGEDKMVKCWDLETNKVIRHYHGHLSGVYALKLHPTLDVL 262
Query: 513 VCAG 524
V AG
Sbjct: 263 VTAG 266
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 30.3 bits (65), Expect = 0.19
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +3
Query: 318 LQEFVAHKANVNCLA--MGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVC 491
+++++ HK + G K + + +G +D K+ +W L +LSGH V V
Sbjct: 418 VRQYMGHKLGNFLIGSCFGGKDDTFVLSGSEDDKIRIWHRESGKLLATLSGHVKCVNYVA 477
Query: 492 F 494
+
Sbjct: 478 Y 478
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 30.3 bits (65), Expect = 0.19
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +3
Query: 336 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 494
H+ ++ L + + TGG DK LW + C + G+T+ + + F
Sbjct: 146 HEMDIVSLDFLPSNPNLFVTGGCDKLAKLWDLRAAYCCATFPGNTSDINSISF 198
Score = 27.9 bits (59), Expect = 1.00
Identities = 18/74 (24%), Positives = 28/74 (37%)
Frame = +3
Query: 273 NNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLM 452
NN + + + E V H V+C + + L TG DK W I + +
Sbjct: 84 NNFCVVYDTSVPDADPVELVGHAGFVSCCK--YVDDGHLLTGSGDKTCMFWDIEQAKAIS 141
Query: 453 SLSGHTTPVECVCF 494
L GH + + F
Sbjct: 142 VLKGHEMDIVSLDF 155
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 30.3 bits (65), Expect = 0.19
Identities = 17/79 (21%), Positives = 32/79 (40%)
Frame = +3
Query: 288 TMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGH 467
TM +Q F HK +V +++ + + A+GG D +W I + L+GH
Sbjct: 44 TMNNMVMDMSVQGFFEHKDSVFSVSINPVHSNLCASGGGDDLGYIWDITTGEQICQLTGH 103
Query: 468 TTPVECVCFGHSEDLVCAG 524
+ + + + G
Sbjct: 104 KDSIVAIDWSFDGTYIATG 122
Score = 27.9 bits (59), Expect = 1.00
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +3
Query: 291 MEATRRSWKLQ---EFVAHKANVNCLAM--GHKSNQVLATGGDDKKVNLWAIGRQSCLMS 455
M++ R WK EF+ V+ + H LA G +D + +W++ +
Sbjct: 124 MDSQVRLWKSSTGFEFITAFETVDEIVWLSWHPKGLFLAAGCNDGSIWMWSLPSGKVVQV 183
Query: 456 LSGHTTPV 479
+ GHT PV
Sbjct: 184 MYGHTAPV 191
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 29.9 bits (64), Expect = 0.25
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +3
Query: 288 TMEATRRSWK-LQEFVAHKANVNCLAMGHKS--NQVLATGGDDKKVNLWAIGRQSCLMSL 458
T E + S K + F HK ++ + +G + L T +D + +W + + L ++
Sbjct: 156 TFETSNSSVKAISHFSGHKRSIVSMEIGPGPIVSGRLYTASEDNTIRIWDVSTGNLLTTI 215
Query: 459 SGHTTPVECVCFGHSEDLVCAGSQ 530
+ +TP C+ SE +V G++
Sbjct: 216 ALPSTP-SCMTVDPSERVVYVGNE 238
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 29.5 bits (63), Expect = 0.33
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 282 LITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLW 425
LIT E++ + L H VN + + N +LAT GD+ + LW
Sbjct: 48 LITSESSTKVEYLSTLSRHTQAVNVVRFNPEGN-ILATAGDEGTIMLW 94
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 29.5 bits (63), Expect = 0.33
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +3
Query: 333 AHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDL 512
AH+ V +A ++ + T DD + +W + + L+GH V+ V + S+ L
Sbjct: 162 AHEMEVRDVAFSPNDSKFV-TASDDGSLKVWNFHMSTEELKLTGHGWDVKTVDWHPSKGL 220
Query: 513 VCAGSQ 530
+ +GS+
Sbjct: 221 LASGSK 226
Score = 29.5 bits (63), Expect = 0.33
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 369 HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 479
H S +LA+G D V W +C+ +L GH +
Sbjct: 215 HPSKGLLASGSKDNLVKFWDPRTGTCIATLHGHKNTI 251
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 336 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGH 467
H+ +VNC+ +L TGG D VN +++ L H
Sbjct: 291 HEKDVNCVTWHPLYPNLLTTGGSDGSVNHYSLDEPPLLSQQKYH 334
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 29.1 bits (62), Expect = 0.43
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +3
Query: 318 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 497
++E+ H A++ L + N L + DK LW R+ CL H+ V + F
Sbjct: 302 IREYAGHTADI--LDLSWSRNNFLLSSSMDKTARLWHPVRKDCLCCFE-HSDFVTSIAFH 358
Query: 498 HSED 509
+D
Sbjct: 359 PKDD 362
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 29.1 bits (62), Expect = 0.43
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 336 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCL 449
H+ N+ C+ + S +L +G D+ + +W I SCL
Sbjct: 100 HEHNIPCITF-NSSGTLLLSGSIDRSLQIWDITSLSCL 136
>SPBC17D11.08 |||WD repeat protein, human WDR68
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 28.7 bits (61), Expect = 0.57
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 336 HKANVNCLAMGHKSNQVLATGGDDKKVNLW 425
HK +VN + S LAT GDD V+LW
Sbjct: 314 HKGDVNAVKWMPGSKSKLATCGDDCVVSLW 343
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 28.3 bits (60), Expect = 0.76
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Frame = +3
Query: 270 RNNLLITMEATR--RSW-----KLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWA 428
+N+ L+T A R R W K H V C+A ++ +G D K+ LW+
Sbjct: 265 KNDFLLTSSADRTVRLWHPKSTKSLAVFRHNEIVTCVAFHPIDDRYFVSGSLDCKIQLWS 324
Query: 429 IGRQSCL 449
I R L
Sbjct: 325 ILRHKIL 331
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 333 AHKANVNCLAMGHKSNQVLATGGDDKKVNLWAI 431
AH+ N L+ + N + +G D +V LW I
Sbjct: 434 AHRVNGRVLSRLSEDNSYIISGSDTNEVVLWHI 466
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 336 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGH 467
H+ V LAM +N++ + D + + +W++ + S + +L GH
Sbjct: 249 HRDAVMGLAMRRGTNEMFSCSAD-RSIKVWSLDQMSYIETLFGH 291
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 387 LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGSQ 530
LA+G + V +W + S L+GHT ++ VC+ + + S+
Sbjct: 39 LASGLVNGSVVIWDLSTFSVSRVLTGHTRAIQSVCWSSCDRFLLTASR 86
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +3
Query: 369 HKSNQVLATGGDDKKVNLWAI-GRQSCLMSLSGHTTPVECVCF 494
H + +LATGG D +W I +L + V +CF
Sbjct: 309 HPNGNILATGGQDTTAKVWDIRALGKSFRNLGSQMSAVTNLCF 351
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 26.6 bits (56), Expect = 2.3
Identities = 8/27 (29%), Positives = 19/27 (70%)
Frame = +3
Query: 345 NVNCLAMGHKSNQVLATGGDDKKVNLW 425
+VN L++ + +Q++ +GG + +N+W
Sbjct: 49 SVNALSIDNTIHQLMVSGGANSSINVW 75
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 453 SLSGHTTPVECVCFGHSEDLVCAGS 527
SL HT PV C+ SE V +GS
Sbjct: 227 SLKKHTAPVSCLALHGSEKKVLSGS 251
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 26.2 bits (55), Expect = 3.0
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Frame = +3
Query: 270 RNNLLITMEATRRSWKLQEFVAHKANVNCLAMGH----------KSNQVLATGGDDKKVN 419
R L +++ T R W L KA++ + GH K+ ++ +G +
Sbjct: 2308 RTFLTASLDLTLRLWTLSTNKPIKASLKRVLYGHRYRITCVTVCKAFSIIVSGDAGGNLI 2367
Query: 420 LWAIGRQSCLMSLSGHTTPVECV 488
+W + R + SLS + P++ +
Sbjct: 2368 IWDLNRAEFVSSLSVYKLPIQTI 2390
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = +3
Query: 330 VAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGH 467
+ K + +A+ + QV GG D + +W + C L GH
Sbjct: 174 IEEKYPLTAVAIAQQGTQVFI-GGIDGAIKIWDLRNNHCSHVLKGH 218
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 456 LSGHTTPVECVCFGHSEDLVCA 521
LSGHT+PV V F L+ A
Sbjct: 183 LSGHTSPVRSVAFSPGSTLLAA 204
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +3
Query: 336 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLV 515
H + V +A S +LA GD K + ++ + + L GH + V F DL+
Sbjct: 186 HTSPVRSVAFSPGST-LLAAAGDSKMITIYDVLSGDQVGQLRGHAAWIFAVAFNPVGDLL 244
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 25.4 bits (53), Expect = 5.3
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +3
Query: 306 RSWKLQEFV----AHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTT 473
R WK E + HK+ V + K LA+G D + +W I ++ L L GH
Sbjct: 89 RLWKDGELLITLNGHKSAVTTMDFD-KMGTRLASGSMDTDIIVWDIVAETGLFRLRGHKD 147
Query: 474 PVECVCF 494
+ + F
Sbjct: 148 QITKLLF 154
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 7.0
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = +3
Query: 273 NNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLM 452
+++ + A+ + +L +F A + L G K Q LA G D + +W I +
Sbjct: 145 SSIYLWSAASGKVVQLHDFGATNHVTSVLWTG-KGTQ-LAVGTDSGVIYIWDIESTKSVR 202
Query: 453 SLSGHTTPVECVCF 494
SL GH+ V + +
Sbjct: 203 SLKGHSERVAALAW 216
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 387 LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG-HSEDLVCAG 524
LA+GG+D + +W L HT V+ + + H ++ +G
Sbjct: 264 LASGGNDNNLFVWDYRSSRPLHKFEEHTAAVKAIGWSPHQRGILASG 310
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +3
Query: 387 LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 494
+ TG DD V+ W + L S ++ + +CF
Sbjct: 238 MVTGSDDGSVHCWDVKTGVSLQSFQFRSSQILSLCF 273
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/50 (22%), Positives = 26/50 (52%)
Frame = +3
Query: 315 KLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSG 464
+L+ AH+++V + + + AT DD+ + +W + S +++G
Sbjct: 168 RLKRIEAHQSHVKGITFD-PAGKYFATESDDRTIKVWRVSDFSIEKTITG 216
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/66 (19%), Positives = 27/66 (40%)
Frame = +3
Query: 273 NNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLM 452
NNL+ + L H+ V + + ++ +LAT D ++ + SC+
Sbjct: 211 NNLVYCYDIANLKTPLSVLSGHQLAVRSIKSSNSAHDLLATASYDMTSRIFDPEQHSCIR 270
Query: 453 SLSGHT 470
+ H+
Sbjct: 271 KVDLHS 276
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.0 bits (52), Expect = 7.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 345 NVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 479
+VN L+ + +LATG D+ +W++ L S S TPV
Sbjct: 339 DVNVLSWNTRVPNLLATGADN---GVWSVWDLRSLKSSSSVATPV 380
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 172 KYFFSTILSNFIYKYCNPN 228
+YFF LS I + C+PN
Sbjct: 1893 QYFFLVALSQMISRVCHPN 1911
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,182
Number of Sequences: 5004
Number of extensions: 44549
Number of successful extensions: 255
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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