Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18o17
         (530 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   5.9  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   5.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.9  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 468 TTPVECVCFGHSEDLVCA 521
           T  +E +C+   ED++C+
Sbjct: 205 TERLEALCWTQDEDIICS 222


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +2

Query: 299 YPKIMETTRICCTQSKCQLPSNGT*VQSGFSNWRR 403
           YP+  E  ++C   S+    +N T  +    N RR
Sbjct: 646 YPEFQENVQLCSEISESYSSNNKTLCKCDAQNCRR 680


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 313 HDLRVASIVINKLLRELHEKNF 248
           HDL+  +  I KLLR     NF
Sbjct: 63  HDLQCYTTCIMKLLRTFKNGNF 84


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = -3

Query: 285 LINYYENSMKRISSFKTINVW---VTIFI 208
           L +  ENS+ ++S  K   +W    TIF+
Sbjct: 277 LASKVENSLPKVSYIKASEIWFLGCTIFL 305


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 468 TTPVECVCFGHSEDLVCA 521
           T  +E +C+   ED++C+
Sbjct: 152 TERLEALCWTQDEDVICS 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,048
Number of Sequences: 438
Number of extensions: 2987
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)