Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18o16
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.2  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.8  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 376 DPKVQQDIKHWPFQVISE 429
           DP V +D +HW F  + E
Sbjct: 855 DPAVYEDWRHWKFPNLVE 872


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 514 SLKPLKISLQERISLYPLYIRRQFLV 437
           SL P+ ++    +  +PL  RR+F V
Sbjct: 262 SLSPIAVNGYRTLFFHPLSSRREFAV 287


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +1

Query: 373 GDPKVQQDIKHWPFQVISEGGEPKIVVEYKGDTRKFA 483
           G P +  D +H       E G   +V E   D  KFA
Sbjct: 744 GKPTISPDSRHLVTLDKQETGVTLVVQEISSDGLKFA 780


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,160
Number of Sequences: 438
Number of extensions: 3761
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)