Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18o14
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    29   0.64 
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    28   0.85 
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ...    27   2.0  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   3.4  
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    25   7.9  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   7.9  

>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 475 DDYFLKRQEYTVHTKLIFRQIHNSFNNEKVLKLWKNRNVLLLK 347
           ++Y++K   Y  +    +    N F  EKVLK WK R  L+ K
Sbjct: 38  NEYYIKWAGYDWYDNT-WEPEQNLFGAEKVLKKWKKRKKLIAK 79


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 28.3 bits (60), Expect = 0.85
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -1

Query: 538 ITPSIKLMCKMISRPCFFVIRDDYFLKRQEYTVHTKLIFRQIHNSFNNEK 389
           ITPSI  + KM+S        D+  ++ QE+T H+      I N+F N +
Sbjct: 585 ITPSISKILKMVSEDAKSQRIDELSVEDQEHTTHSSHTTSDI-NAFPNSQ 633


>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 72  DDTQNREAFHIFAP--RFLPLWWCGNRTVNYFKNLRPLSFI 188
           D  +N+E   I  P  RF P +W     ++Y +NL  L FI
Sbjct: 60  DPIRNKEEVLILTPIARFYPQYWKNLLELDYPRNLISLGFI 100


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 97  NASRFCVSSLRRGHAN 50
           +ASRFCV SL+R  AN
Sbjct: 579 SASRFCVESLKRQKAN 594


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 129 KEVRTVVQKCGTLHDFACHPCAGAMLI 49
           ++++ VV   G L +  CH C G  L+
Sbjct: 101 QQIQKVVVALGDLMNVECHACIGGTLV 127


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 161 KVIDGSISTPPKR*EPWCKNVERFTILRVIL 69
           +++   I TPP    PWC     +TI   IL
Sbjct: 235 EILANGIITPPTWTRPWCSTNVDYTIPEPIL 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,683
Number of Sequences: 5004
Number of extensions: 49440
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)