Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18o12
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce...    28   1.0  
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    27   2.4  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    25   5.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.2  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    25   9.5  
SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ...    25   9.5  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   9.5  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    25   9.5  

>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 445

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 235 LKHQLMNSFWCKQVDGNTKRNSLYTFLA 152
           L+H + NSF    +DG+T  N    FLA
Sbjct: 246 LRHAINNSFNSISIDGDTSTNDTIAFLA 273


>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +3

Query: 201 LHQNEFISWCFKFIKPTTKPN*KIAKIFFPTPLN 302
           LH+ +F   C+++++     N   A++FF   L+
Sbjct: 72  LHEQDFYDLCYQYLRKAASQNVVYAEMFFDPQLH 105


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +1

Query: 361 NNTKPDIIEQFSKMMTDEEKSKIAKLLHDVAVKENQLPERCSGLVKDIREKFGKDSNED 537
           N   P I+   +K +    KS    +  D  +   + P  C G  K + +KFG D + +
Sbjct: 320 NYHNPSILLIKAKKINANHKSSSRPISLDATIPR-KYPPHCIGTDKAVPQKFGADFHNE 377


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 376  DIIEQFSKMMTDEEKSKIAKLLHDVAVKENQLPE 477
            D+IE+F K+ + E+   ++ L+    +K   L E
Sbjct: 1264 DLIEKFEKLSSSEKNDNLSNLIERQIIKYRSLFE 1297


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 424 KIAKLLHDVAVKENQLPERCSGLVK 498
           K+  LLH++ VK+  LPE    L+K
Sbjct: 420 KLRLLLHELLVKKKALPELDKDLLK 444


>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 111 IILFLVTVCCIFGYARNVYREFL 179
           +I+FL  + C+ GY  +  R+F+
Sbjct: 121 VIIFLEILMCLIGYVESYDRQFV 143


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -2

Query: 404 IIFENCSMMSGFVLFIKYTVALVTIGIDAPIVKSI*WGRKEDFCNFLIWFGGWFYKF 234
           ++ E  S++S     ++Y VALV +   + I+K +       F  F  W G  ++ F
Sbjct: 52  LVGEKLSIVSASSCLLQYLVALVVVPFYSTIIKKL----TPWFTVFTTWVGEEYFFF 104


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 170 PIYIPSIPKNAAHGNKKQNNFI 105
           P++ P  P +   GNK+ N F+
Sbjct: 75  PVFDPRKPAHELKGNKRDNTFV 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,463
Number of Sequences: 5004
Number of extensions: 51411
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)