Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18o12
         (543 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1365 - 32967604-32968367,32969097-32969221,32969583-32969632     28   4.2  
01_07_0320 + 42708082-42708324,42708359-42708409,42708987-427091...    28   5.5  

>04_04_1365 - 32967604-32968367,32969097-32969221,32969583-32969632
          Length = 312

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 360 YKIYCRLGNHWHRCSHSQINLV 295
           Y  Y RL NHW++C  + +  V
Sbjct: 260 YVTYLRLNNHWYKCDDAWVTRV 281


>01_07_0320 +
           42708082-42708324,42708359-42708409,42708987-42709122,
           42709226-42709275,42709978-42710066,42710398-42710434,
           42710435-42710471,42710588-42710733,42711099-42711241,
           42711735-42711768,42711962-42712064,42712236-42712381,
           42712982-42713323,42713416-42713656,42713733-42713788,
           42713852-42713920
          Length = 640

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 159 NVYREFLFVLPSTCLHQNEFISWCFKFIKPTT 254
           N+Y +FL  + STC  ++  + W F  I+ TT
Sbjct: 446 NIYGDFLQEITSTCCLEDVEMGWAFCPIRVTT 477


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,806,223
Number of Sequences: 37544
Number of extensions: 275461
Number of successful extensions: 589
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)