Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18o12
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74041-2|CAA98521.1|  237|Caenorhabditis elegans Hypothetical pr...    31   0.54 
AL137227-7|CAB70235.1|  787|Caenorhabditis elegans Hypothetical ...    28   3.8  
L10986-6|AAA28015.1|  262|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF098997-8|AAC68719.3|  335|Caenorhabditis elegans Serpentine re...    28   5.0  
L40996-1|AAA86431.1|  593|Caenorhabditis elegans GTP-binding pro...    27   8.7  
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    27   8.7  
AC024763-10|AAK93862.2|  598|Caenorhabditis elegans Hypothetical...    27   8.7  

>Z74041-2|CAA98521.1|  237|Caenorhabditis elegans Hypothetical
           protein T03F7.6 protein.
          Length = 237

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 22/57 (38%), Positives = 29/57 (50%)
 Frame = +3

Query: 111 IILFLVTVCCIFGYARNVYREFLFVLPSTCLHQNEFISWCFKFIKPTTKPN*KIAKI 281
           I LFL   C IFG    +Y    FVL +T L+    + +   F+  +TK   KIAKI
Sbjct: 140 ISLFLSFWCLIFGIIPFIYLSEYFVLANTTLNLTATV-FPILFLAGSTKIRKKIAKI 195


>AL137227-7|CAB70235.1|  787|Caenorhabditis elegans Hypothetical
           protein F58D5.6 protein.
          Length = 787

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 19/79 (24%), Positives = 36/79 (45%)
 Frame = +1

Query: 205 TKMNSLVGASNL*NQPPNQIKKLQKSSFRPH*IDLTMGASMPMVTKATVYFINNTKPDII 384
           +K+N       L    P  ++KL+    +P    L++  S+          +++   ++ 
Sbjct: 306 SKLNKYYEPEKLFTSLPKCVEKLKALKTQPDFDKLSIIDSVVNTFHENARELHDKMSNVH 365

Query: 385 EQFSKMMTDEEKSKIAKLL 441
            +FSK+ TDEE  KI  +L
Sbjct: 366 GEFSKVYTDEEAKKIHNIL 384


>L10986-6|AAA28015.1|  262|Caenorhabditis elegans Hypothetical
           protein F10E9.4 protein.
          Length = 262

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 418 KSKIAKLLHDVAVKENQLPERCSGLVKDIREKFGKDSNEDED 543
           K +  K++    +KE +  E  +    D++EK  ++ +EDED
Sbjct: 218 KGEYVKMIEKAEIKEEEEVEDEADEETDVKEKVKEEEDEDED 259


>AF098997-8|AAC68719.3|  335|Caenorhabditis elegans Serpentine
           receptor, class i protein54 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 437 SFAIFDFSSSVIIFENCSMMSGFVLFIKYTVALVTI 330
           +F+I++FSS  +     S++ GF+ F  + + LV I
Sbjct: 181 NFSIYEFSSKFLALIIFSILGGFLSFTVFILVLVNI 216


>L40996-1|AAA86431.1|  593|Caenorhabditis elegans GTP-binding
           protein protein.
          Length = 593

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = +1

Query: 253 PNQIKKLQKSSFRPH*IDLTMGASMPMVTKATVYFINNTKPDIIEQFSKMMTDEEKSKIA 432
           PN    L   S R     ++MG S     +  V F    +P+ I   +KM+  E ++K  
Sbjct: 486 PNYQAMLHIGSVRQTATLVSMGRSASTGDRDKVQFKFIRQPEYIRPGTKMVFREGRTKAV 545

Query: 433 KLLHDVAVKENQLPERCSGLVKDIREK-FGKDS 528
             +  V  +E+   +R     KD R+K +GK S
Sbjct: 546 GTVSSVVPQESLAQQRAK--QKDGRQKQYGKKS 576


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 315  HSQINLVGSERRFLQFFNLVW 253
            H +I+L+G ER  ++ FN+ W
Sbjct: 1957 HLEIHLIGDERALVEDFNVKW 1977


>AC024763-10|AAK93862.2|  598|Caenorhabditis elegans Hypothetical
           protein Y39A3CL.1 protein.
          Length = 598

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 238 NLKHQLMNSFWCKQVDGN 185
           +L+HQ+ N+ W K+V+GN
Sbjct: 176 SLQHQVRNASWNKEVEGN 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,949,646
Number of Sequences: 27780
Number of extensions: 284702
Number of successful extensions: 686
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)