Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18o07
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 74 1e-14
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 54 1e-08
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 46 3e-06
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 36 0.003
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 36 0.006
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 33 0.023
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 32 0.071
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 28 0.88
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 28 1.2
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 27 1.5
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 26 3.5
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 4.7
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 25 8.2
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 25 8.2
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 74.1 bits (174), Expect = 1e-14
Identities = 34/53 (64%), Positives = 41/53 (77%)
Frame = +2
Query: 107 SDTFNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKVADNKKLESKLDYK 265
+D NGADLRNV TEAG AI+ +R+Y+IQ DLM A RKVAD KKLE +DY+
Sbjct: 334 TDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLKKLEGTIDYQ 386
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 54.4 bits (125), Expect = 1e-08
Identities = 26/48 (54%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Frame = +2
Query: 122 GADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKVA-DNKKLESKLDY 262
GA+LR+VCTEAG+FAIRA R ++D + AV+KV N+K S DY
Sbjct: 386 GAELRSVCTEAGMFAIRARRRVATEKDFLDAVQKVVKGNQKFSSTADY 433
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 46.4 bits (105), Expect = 3e-06
Identities = 20/36 (55%), Positives = 27/36 (75%)
Frame = +2
Query: 119 NGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKV 226
+GA+L+ VCTEAG+FA+R R ++ QED AV KV
Sbjct: 352 SGAELKGVCTEAGMFALRERRVHVTQEDFELAVAKV 387
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 36.3 bits (80), Expect = 0.003
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 110 DTFNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKVADNK 238
D +GA+++ + +EAGL A+R R ++ +D +A KV K
Sbjct: 395 DDLSGAEIKAIVSEAGLLALRERRMRVVMDDFRQAREKVLKTK 437
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 35.5 bits (78), Expect = 0.006
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 107 SDTFNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKVADNK 238
+D +NGA L++VC EAG+ A+R I E M + +V K
Sbjct: 387 TDEYNGAMLKSVCVEAGMIALRQGDTKINHEHFMDGILEVQMRK 430
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 33.5 bits (73), Expect = 0.023
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 110 DTFNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKVADNKKLESKLDYK 265
D +GA + + +AGL A+R R I+Q D+ +A + +E YK
Sbjct: 338 DASSGAQIAAIMQDAGLLAVRKSRGVILQSDIEEAYARAVKPTDMEQFAFYK 389
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 31.9 bits (69), Expect = 0.071
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 116 FNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKVADNKKLESKL 256
F GAD+ NVC E L A R+ + +A+ +V + +S++
Sbjct: 503 FTGADIMNVCNEGALIAARSNSNEVQMVHFEQAIERVTAGLEKKSRV 549
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 28.3 bits (60), Expect = 0.88
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 116 FNGADLRNVCTEAGLFAIR 172
+ GADL+ +CTEA L A+R
Sbjct: 580 YGGADLKALCTEAALNAVR 598
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 107 SDTFNGADLRNVCTEAGLFAIR 172
S + GADLR +CTEA L +I+
Sbjct: 471 SKGYGGADLRALCTEAALNSIK 492
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 223 SSRQQKAGEQTGLQARLILNYNYHVTHLRGAKKKGLEPLT 342
S+R+ A + + R+IL ++ H KK+G+ PLT
Sbjct: 673 SAREHAALQPRAMNGRIILTKSFARIHETNLKKQGVLPLT 712
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 97 NASRFCVSSLRRGHAN 50
+ASRFCV SL+R AN
Sbjct: 579 SASRFCVESLKRQKAN 594
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 94 RSTFFRYFQRRGPAQRLHGGRTLRHQGRAGVHHTGGSNE 210
RS+ + G + LH G + + ++HTGG NE
Sbjct: 508 RSSSSSHNNHNGNVRNLHSGSMNNYNTDSLLNHTGGHNE 546
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.0 bits (52), Expect = 8.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 223 SSRQQKAGEQTGLQARLILNYNYHVTHLRGAKKKGLEPLT 342
SSR+ A E L ++ ++ H KK+GL PLT
Sbjct: 664 SSREHAALEPRYLGGAAVITKSFARIHETNLKKQGLLPLT 703
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 25.0 bits (52), Expect = 8.2
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = -1
Query: 163 EESCLRADVAQVRAVESI*KMWNASRFCVSSLRRGHANLL--CIVPILVYVLPK 8
EE C AD ++ VES ++ A R C+SS + G+ + L + ++ VLPK
Sbjct: 143 EEIC--AD--KIETVESEKELIKAIRTCISSKQYGNEDFLSDLVAKAILTVLPK 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,730
Number of Sequences: 5004
Number of extensions: 41006
Number of successful extensions: 97
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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