Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18o07
(589 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 95 2e-20
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 95 2e-20
Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 48 5e-06
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 46 3e-05
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 46 3e-05
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 46 3e-05
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 46 3e-05
U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical pr... 45 5e-05
AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 43 2e-04
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 40 0.001
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 33 0.11
Z71180-1|CAA94891.1| 267|Caenorhabditis elegans Hypothetical pr... 31 0.61
U41029-1|AAF99951.1| 479|Caenorhabditis elegans Hypothetical pr... 31 0.80
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 30 1.1
AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical ... 30 1.1
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 29 1.9
U56965-8|AAB52663.1| 314|Caenorhabditis elegans Hypothetical pr... 29 1.9
AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aa... 29 2.4
AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin pr... 29 2.4
Z93388-12|CAB07661.2| 294|Caenorhabditis elegans Hypothetical p... 28 4.3
AC132211-4|AAN01432.2| 238|Caenorhabditis elegans Hypothetical ... 28 4.3
AC024789-1|AAK85500.1| 238|Caenorhabditis elegans Hypothetical ... 28 4.3
U23523-2|AAC46559.2| 399|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z49967-10|CAA90254.1| 553|Caenorhabditis elegans Hypothetical p... 27 7.5
L25599-9|AAN63393.1| 683|Caenorhabditis elegans Aconitase prote... 27 9.9
L25599-8|AAL65788.1| 665|Caenorhabditis elegans Aconitase prote... 27 9.9
L25599-7|AAA28050.2| 777|Caenorhabditis elegans Aconitase prote... 27 9.9
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 95.5 bits (227), Expect = 2e-20
Identities = 44/60 (73%), Positives = 51/60 (85%)
Frame = +2
Query: 92 SVPHFSDTFNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKVADNKKLESKLDYKPV 271
+V SD F+ ADLRNVCTEAG+FAIRAERE++I ED MKAVRKV D K+LE+KLDYKPV
Sbjct: 339 AVVKLSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVGDAKRLETKLDYKPV 398
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 95.5 bits (227), Expect = 2e-20
Identities = 44/60 (73%), Positives = 51/60 (85%)
Frame = +2
Query: 92 SVPHFSDTFNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKVADNKKLESKLDYKPV 271
+V SD F+ ADLRNVCTEAG+FAIRAERE++I ED MKAVRKV D K+LE+KLDYKPV
Sbjct: 347 AVVKLSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVGDAKRLETKLDYKPV 406
>Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical
protein C52E4.4 protein.
Length = 435
Score = 48.0 bits (109), Expect = 5e-06
Identities = 19/35 (54%), Positives = 29/35 (82%)
Frame = +2
Query: 122 GADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKV 226
GA++R+VCTEAG+FAIRA R+ ++D ++A+ KV
Sbjct: 384 GAEIRSVCTEAGMFAIRARRKVATEKDFLEAINKV 418
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/49 (44%), Positives = 32/49 (65%)
Frame = +2
Query: 119 NGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKVADNKKLESKLDYK 265
+GA++++VCTEAG+FA+R R ++ QED AV KV K E + K
Sbjct: 365 SGAEVKSVCTEAGMFALRERRIHVTQEDFEMAVGKVM-QKDSEKNMSIK 412
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/49 (44%), Positives = 32/49 (65%)
Frame = +2
Query: 119 NGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKVADNKKLESKLDYK 265
+GA++++VCTEAG+FA+R R ++ QED AV KV K E + K
Sbjct: 360 SGAEVKSVCTEAGMFALRERRIHVTQEDFEMAVGKVM-QKDSEKNMSIK 407
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/49 (44%), Positives = 32/49 (65%)
Frame = +2
Query: 119 NGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKVADNKKLESKLDYK 265
+GA++++VCTEAG+FA+R R ++ QED AV KV K E + K
Sbjct: 381 SGAEVKSVCTEAGMFALRERRIHVTQEDFEMAVGKVM-QKDSEKNMSIK 428
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +2
Query: 107 SDTFNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKVADNKK 241
+D FNGA + VC EAG+ A+R + I+ ED M A+ +V KK
Sbjct: 379 TDDFNGAQCKAVCVEAGMIALRRDATEILHEDFMDAILEVQAKKK 423
>U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical
protein C10G11.8 protein.
Length = 438
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/43 (44%), Positives = 32/43 (74%)
Frame = +2
Query: 113 TFNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKVADNKK 241
+ +GA+++ VCTEAG+ A+RA+R+ + +D KAV+ V +KK
Sbjct: 387 SISGAEIKAVCTEAGMLALRAQRKCVGTDDFEKAVKSVMLSKK 429
>AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 2 protein.
Length = 443
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +2
Query: 110 DTFNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKVADNKK 241
D +GAD++ +CTEAGL A+R R + ED K+ V KK
Sbjct: 391 DELSGADIKAMCTEAGLLALRERRMRVTMEDFQKSKENVLYRKK 434
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +2
Query: 110 DTFNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKV 226
D +GAD+ ++C EAG+ A+R R ++ +DL KA + V
Sbjct: 364 DKISGADINSICQEAGMQAVRENRYVVLTKDLEKAYKNV 402
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 116 FNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKV 226
F+GAD+ NVC EA L A R I + +A+ +V
Sbjct: 501 FSGADISNVCNEAALIAARDANHEISNKHFEQAIERV 537
>Z71180-1|CAA94891.1| 267|Caenorhabditis elegans Hypothetical
protein F22E12.3 protein.
Length = 267
Score = 31.1 bits (67), Expect = 0.61
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 144 QTLRRSAPLKVSEKCGTLHDFACHPCAG 61
Q+LR+S P ++C T HDFA C G
Sbjct: 133 QSLRKSQPALFEKRCLTDHDFAAIDCCG 160
>U41029-1|AAF99951.1| 479|Caenorhabditis elegans Hypothetical
protein F47G3.3 protein.
Length = 479
Score = 30.7 bits (66), Expect = 0.80
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +1
Query: 232 QQKAGEQTGLQARLILNYNYHVTHLRGAKKKGLEPLTK*VIHSIQTSL 375
+Q+A EQT L + +Y+YH T+++ A LE +T + +TSL
Sbjct: 357 EQEAKEQTALDIKQASDYSYHYTNVQIAINDVLELITSNFENLSETSL 404
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 116 FNGADLRNVCTEAGLFAIRAEREYIIQED 202
F GADL ++C+EA L IR + E I ED
Sbjct: 412 FVGADLASLCSEAALQQIREKMELIDLED 440
>AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical
protein F32D1.1 protein.
Length = 594
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = +2
Query: 95 VPHFSDTFNGADLRNVCTEAGLFAIRAEREYI--IQEDLMKAV 217
+ +D ++GAD+R +CTEA + IR + I I +D ++AV
Sbjct: 511 IRELTDGYSGADMRQLCTEAAMGPIRDIGDDIETIDKDDIRAV 553
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 116 FNGADLRNVCTEAGLFAIRAEREYIIQED 202
F GADL ++C+EA + IR + E I ED
Sbjct: 411 FVGADLASLCSEAAIQQIREKMELIDLED 439
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 116 FNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKVADNKKLESKL 256
F+GADL +C A AIR E I+++ + R + +E +L
Sbjct: 687 FSGADLTEICQRACKLAIRESIEREIRQEKERQDRSARGEELMEDEL 733
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 116 FNGADLRNVCTEAGLFAIRAEREYIIQED 202
F GADL ++C+EA + IR + E I ED
Sbjct: 411 FVGADLASLCSEAAIQQIREKMELIDLED 439
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 116 FNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKVADNKKLESKL 256
F+GADL +C A AIR E I+++ + R + +E +L
Sbjct: 687 FSGADLTEICQRACKLAIRESIEREIRQEKERQDRSARGEELMEDEL 733
>U56965-8|AAB52663.1| 314|Caenorhabditis elegans Hypothetical
protein C15H9.3 protein.
Length = 314
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 389 VNQNN*NTKLIHFKFQQQWYLELYPLMKIS 478
VN ++ TKL HF W+++LY L+ I+
Sbjct: 73 VNYDDFPTKLFHFTTYSCWFIQLYSLIAIA 102
>AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aaa
protease familyprotein 1 protein.
Length = 747
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 116 FNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKVADNKKLESK 253
F GAD+ NVC E+ + A + + +D+ A+ +V + S+
Sbjct: 497 FTGADIMNVCNESAIRAASNKCHVVTHKDMEYALDRVLAGSEKRSR 542
>AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin
protein.
Length = 747
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 116 FNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKVADNKKLESK 253
F GAD+ NVC E+ + A + + +D+ A+ +V + S+
Sbjct: 497 FTGADIMNVCNESAIRAASNKCHVVTHKDMEYALDRVLAGSEKRSR 542
>Z93388-12|CAB07661.2| 294|Caenorhabditis elegans Hypothetical
protein T10C6.4 protein.
Length = 294
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -3
Query: 587 FEIQIYSDVYLRHIAYTINFKIFFFVSFLINTLLTVH*FSSMGTIRDTIV 438
F I ++ + + A +I F FFFV +NT+L V + G I TI+
Sbjct: 32 FGALILNETFSQFAATSITF-FFFFVGIFLNTILIVSNSAIFGNISLTIL 80
>AC132211-4|AAN01432.2| 238|Caenorhabditis elegans Hypothetical
protein Y108F1.1 protein.
Length = 238
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 113 TFNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKVADNKKLESK 253
+F GAD+ NVC E+ + A + + +D+ A+ +V + S+
Sbjct: 142 SFTGADIMNVCNESAIRAASNKCHVVTIKDMEYALDRVLAGSEKRSR 188
>AC024789-1|AAK85500.1| 238|Caenorhabditis elegans Hypothetical
protein Y47C4A.1 protein.
Length = 238
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 113 TFNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKVADNKKLESK 253
+F GAD+ NVC E+ + A + + +D+ A+ +V + S+
Sbjct: 142 SFTGADIMNVCNESAIRAASNKCHVVTIKDMEYALDRVLAGSEKRSR 188
>U23523-2|AAC46559.2| 399|Caenorhabditis elegans Hypothetical
protein F53A9.4 protein.
Length = 399
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 228 PTTKSWRANWTTSPSDFKL*LSCDSFKGRQEKRFRTTD*IGNSFDSN 368
P R + ++S SD +L +SF+ Q++RFR + +GN DS+
Sbjct: 9 PPPPKRRISESSSSSDDEL-TGNNSFRENQQRRFRENNEVGNISDSD 54
>Z49967-10|CAA90254.1| 553|Caenorhabditis elegans Hypothetical
protein F54C9.8 protein.
Length = 553
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 113 TFNGADLRNVC-TEAGLFAIRAEREYIIQEDLMKAVRKVADNKKLESKLD 259
T GA ++C + AG F I+ E+ ++ + VRK+ DN +E LD
Sbjct: 187 TEQGAVFTSLCRSAAGNFIIQKFVEHATLDEQERLVRKMCDNGLIEMCLD 236
>L25599-9|AAN63393.1| 683|Caenorhabditis elegans Aconitase protein
2, isoform c protein.
Length = 683
Score = 27.1 bits (57), Expect = 9.9
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 196 GGSNEGRP*SSRQQKAGEQTGLQARLILNYNYHVTHLRGAKKKGLEPLT 342
G N G SSR+ A E L R I+ ++ H KK+G+ PLT
Sbjct: 561 GDENYGEG-SSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLT 608
>L25599-8|AAL65788.1| 665|Caenorhabditis elegans Aconitase protein
2, isoform b protein.
Length = 665
Score = 27.1 bits (57), Expect = 9.9
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 196 GGSNEGRP*SSRQQKAGEQTGLQARLILNYNYHVTHLRGAKKKGLEPLT 342
G N G SSR+ A E L R I+ ++ H KK+G+ PLT
Sbjct: 543 GDENYGEG-SSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLT 590
>L25599-7|AAA28050.2| 777|Caenorhabditis elegans Aconitase protein
2, isoform a protein.
Length = 777
Score = 27.1 bits (57), Expect = 9.9
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 196 GGSNEGRP*SSRQQKAGEQTGLQARLILNYNYHVTHLRGAKKKGLEPLT 342
G N G SSR+ A E L R I+ ++ H KK+G+ PLT
Sbjct: 655 GDENYGEG-SSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLT 702
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,496,171
Number of Sequences: 27780
Number of extensions: 239762
Number of successful extensions: 607
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -