Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18o06
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    27   1.1  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   3.3  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   3.3  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   5.7  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    24   7.6  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    24   10.0 
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    24   10.0 
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    24   10.0 

>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = -2

Query: 184 IPNSYCDVTNVFIKMIHISNNVIMNRNVMSIFCRNISNGGLISQSEETLQDVYSTLK 14
           +   +C V N+  K   +S+   MN     +    + NGG+  +  +T   +++ LK
Sbjct: 236 LQGDHCSVMNIISKASFLSSKAGMNSGWNDLDSLEVGNGGMSFEEYKTHFTMWAILK 292


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -2

Query: 154  VFIKMIHISNNVIMNRNVMSIFCRNISNGGLISQSEETLQ 35
            VF+  +H+  N   N    + F   +   G++S+ E  +Q
Sbjct: 1590 VFVSWVHLLRNSATNDETKAAFVYQLHKQGILSEPELCIQ 1629


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 133 ISNNVIMNRNVMSIFCRNISNGGLISQ 53
           ++NNV +     ++F  ++SNG ++SQ
Sbjct: 202 LNNNVFVGSKNTTLFTIDVSNGDIVSQ 228


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 293 CRREDQIYNKIYRRECEEEWL 355
           CRR  Q  N  + REC ++WL
Sbjct: 538 CRRLKQC-NHFFHRECIDQWL 557


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -1

Query: 368 VINFITIPLRILVYRFCYIFD 306
           ++N + +P+R L+ + CY F+
Sbjct: 481 LLNEVQVPIRSLIIQPCYFFE 501


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 255 EKNHMINNLSVFDVVEKIKYITKSIDENAKRNGYKVDYILRILN 386
           +++H  N++SVF     I   T   + + KRN  K++ I    N
Sbjct: 34  QQSHTFNSMSVFKNDNAIANQTTVNESDVKRNVEKINDIYECSN 77


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 88   CRNISNGGLISQSEETLQDVYSTL 17
            C+N +N  +  QS E +++VYS+L
Sbjct: 1357 CKNGTNQKISLQSLEIIREVYSSL 1380


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 122 RHYESKRDVYFLPKYFKWRTHLSE*RD-ITRCVLDI 18
           R  E      +  +YFKW  H S+ R+ + + VL++
Sbjct: 337 RKKEEAEGAVWARRYFKWEEHDSDARNALAQAVLEV 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,539,052
Number of Sequences: 5004
Number of extensions: 28698
Number of successful extensions: 82
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)