Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18o06
         (398 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1041 - 23876849-23876959,23877853-23878046,23878621-238786...    29   1.4  
05_01_0437 + 3471154-3471447,3471664-3471858,3472619-3472741,347...    27   7.2  

>08_02_1041 -
           23876849-23876959,23877853-23878046,23878621-23878691,
           23878956-23879009,23879051-23879187
          Length = 188

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 240 RLMPREKNHMINNLSVFDVVEKIKYITKSIDENAKR 347
           +L     +H+  N  +  VVEKI+YI + +DE+A++
Sbjct: 110 KLASNVADHLPENGCLQKVVEKIEYIAEVVDEDAEK 145


>05_01_0437 +
           3471154-3471447,3471664-3471858,3472619-3472741,
           3473245-3473430,3473633-3473766,3473866-3474052,
           3474179-3474280
          Length = 406

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 312 YITKSIDENAKRNGYKV 362
           Y TK++DE AK+NG KV
Sbjct: 370 YSTKALDEMAKKNGGKV 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,503,552
Number of Sequences: 37544
Number of extensions: 137055
Number of successful extensions: 268
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)