Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18n22
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 122 3e-29
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 61 1e-10
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 57 2e-09
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 57 3e-09
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 57 3e-09
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 56 3e-09
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 56 5e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 55 1e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 52 7e-08
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 52 7e-08
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 50 4e-07
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 48 2e-06
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 47 2e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 45 1e-05
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 44 1e-05
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 44 2e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 41 1e-04
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 37 0.002
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 33 0.036
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 29 0.59
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p... 26 5.5
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 5.5
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 122 bits (295), Expect = 3e-29
Identities = 58/85 (68%), Positives = 68/85 (80%)
Frame = +1
Query: 406 DDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASI 585
D +K ++K P D R KT DVT TRG EFE++ LKRELLMGIFE G+E+PSPIQE SI
Sbjct: 16 DRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESI 75
Query: 586 PIALSGKDVLARAKNGTGKTGAYCI 660
PIALSG+D+LARAKNGTGKT A+ I
Sbjct: 76 PIALSGRDILARAKNGTGKTAAFVI 100
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 61.3 bits (142), Expect = 1e-10
Identities = 37/111 (33%), Positives = 58/111 (52%)
Frame = +1
Query: 328 TENRISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEF 507
T+N+ +VG ++S +D G K+ +RR K N F+
Sbjct: 25 TDNQKDKHENVGENVSD---------EDDGNYIASKLLESNRRTKGKKGNGKASN-FQSM 74
Query: 508 CLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCI 660
L + LL IF+KG++ P+PIQ +IP+ L G+DV+ A+ G+GKT A+ I
Sbjct: 75 GLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVI 125
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 57.2 bits (132), Expect = 2e-09
Identities = 26/57 (45%), Positives = 38/57 (66%)
Frame = +1
Query: 490 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCI 660
+ FEE LK +LL GI+ G+E PS +Q +I G+DV+A+A++GTGKT + I
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSI 77
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 56.8 bits (131), Expect = 3e-09
Identities = 27/55 (49%), Positives = 39/55 (70%)
Frame = +1
Query: 496 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCI 660
F++ LK ELL GI+ G+E+PS IQ+ +I L +DVLA+A++GTGKT + I
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSI 75
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 56.8 bits (131), Expect = 3e-09
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 9/127 (7%)
Frame = +1
Query: 307 DKFGKMMTENRISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDR-RIKTSDV-TD 480
D+ G +TEN + S + + T E + +S L IP K+ R+K +D+ D
Sbjct: 49 DRLGPKITENVDAKSEQ--DKATNTIAEDANTKQSENDESNL-IPNKNEVRVKLADLQAD 105
Query: 481 TRG-----NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG--KDVLARAKNGTG 639
FEE LK ELL GI+ ++KPS IQE ++P+ LS ++++ ++++GTG
Sbjct: 106 PNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTG 165
Query: 640 KTGAYCI 660
KT A+ +
Sbjct: 166 KTAAFAL 172
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 56.4 bits (130), Expect = 3e-09
Identities = 25/55 (45%), Positives = 36/55 (65%)
Frame = +1
Query: 496 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCI 660
F +F LK ELL I + G+E PS +Q+ IP ++ G DVL +AK+G GKT + +
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVL 107
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 56.0 bits (129), Expect = 5e-09
Identities = 25/67 (37%), Positives = 40/67 (59%)
Frame = +1
Query: 460 KTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTG 639
K + T + F+ L R +L G+ G+E P+ IQ+ +IP+AL GKD++ A G+G
Sbjct: 249 KEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSG 308
Query: 640 KTGAYCI 660
KT A+ +
Sbjct: 309 KTAAFIV 315
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 54.8 bits (126), Expect = 1e-08
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = +1
Query: 496 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCI 660
F +F L L I + +EKP+ +Q +IP+AL GKD++A+A+ G+GKT AY I
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLI 70
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 52.0 bits (119), Expect = 7e-08
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 10/95 (10%)
Frame = +1
Query: 406 DDVGWKSKL--KIPPKDRRIKTSDVT-DTRGNE-------FEEFCLKRELLMGIFEKGWE 555
DDV W+ K + P+D RI D +G++ +EE L E+L + + ++
Sbjct: 211 DDVPWREKPLEAMKPRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYK 270
Query: 556 KPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCI 660
+PS IQ A+IP+ L KD++ A+ G+GKT A+ I
Sbjct: 271 EPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFII 305
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 52.0 bits (119), Expect = 7e-08
Identities = 24/55 (43%), Positives = 35/55 (63%)
Frame = +1
Query: 490 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAY 654
NEF L LL I G+ +P+P+Q+ SIPI SG+D++A A+ G+GKT +
Sbjct: 169 NEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGF 223
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 49.6 bits (113), Expect = 4e-07
Identities = 21/55 (38%), Positives = 37/55 (67%)
Frame = +1
Query: 496 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCI 660
FEE +L + + G+E P+PIQ+ + P+A+SG+D++ + G+GKT +YC+
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCL 178
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 47.6 bits (108), Expect = 2e-06
Identities = 27/72 (37%), Positives = 39/72 (54%)
Frame = +1
Query: 445 KDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 624
K + S +D +F + L + I E G+E + IQ+ SIP L+G+DVL A
Sbjct: 76 KSVNLNASSTSDIE--KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAA 133
Query: 625 KNGTGKTGAYCI 660
K G+GKT A+ I
Sbjct: 134 KTGSGKTLAFLI 145
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 47.2 bits (107), Expect = 2e-06
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Frame = +1
Query: 478 DTRGNE----FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKT 645
D++ NE F+E + EL + G++ P+PIQ+ +IP+ L+ +DV+ A+ G+GKT
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKT 97
Query: 646 GAYCI 660
A+ +
Sbjct: 98 AAFAL 102
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 44.8 bits (101), Expect = 1e-05
Identities = 22/56 (39%), Positives = 38/56 (67%)
Frame = +1
Query: 493 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCI 660
+F+E + +L G+ K +++P+PIQ A+ P L+G+DV+ A+ G+GKT A+ I
Sbjct: 168 QFDELDVSAKLREGL--KNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGI 221
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 44.4 bits (100), Expect = 1e-05
Identities = 22/52 (42%), Positives = 31/52 (59%)
Frame = +1
Query: 505 FCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCI 660
F L E+L + + G+ KP PIQ IP A G D++ +A G+GKT A+ I
Sbjct: 127 FSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGI 178
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 44.0 bits (99), Expect = 2e-05
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +1
Query: 511 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCI 660
L + + I G+EKP+ IQ +IP SG+DV+ AK G+GKT A+ +
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLL 474
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/55 (32%), Positives = 33/55 (60%)
Frame = +1
Query: 496 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCI 660
F+ + + L + +G++K +P+Q +IP+ L KD++ A G+GKT AY +
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLL 57
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +1
Query: 568 IQEASIPIALSGKDVLARAKNGTGKTGAYCI 660
IQ+ IP AL G+D+L AK G+GKT A+ +
Sbjct: 65 IQKQCIPSALKGRDILGAAKTGSGKTLAFIV 95
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 33.1 bits (72), Expect = 0.036
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 556 KPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCI 660
+P+ IQE I L G++ + AK G+GKT A+ +
Sbjct: 29 EPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFAL 63
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 29.1 bits (62), Expect = 0.59
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 568 IQEASIPIALSGKDVLARAKNGTGKTGAY 654
IQ +IP S +D+LA A G+GKT AY
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAY 100
>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = -3
Query: 227 SKSLLDTYISQFITFTKYFRIVSYVFL 147
S SL+D+Y+S+ + + K+ ++V+ V L
Sbjct: 153 SISLMDSYVSRRVVYCKHIQLVACVCL 179
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 337 RISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDT 483
R+ SS + ++ + E+DK+ D G +KLK PK ++T D+ T
Sbjct: 1315 RVDSSFYTSENLRR---ELDKAFDRSGTAAKLK-HPKKTVVETLDILTT 1359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,858
Number of Sequences: 5004
Number of extensions: 40418
Number of successful extensions: 145
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -