Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18n16
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   3.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 540 NKSASSLPKSHNLLSFNHN 596
           +KS++  P S+N L++N N
Sbjct: 532 SKSSTETPPSYNQLNYNEN 550


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 92  IMRRHLLIYQFTKPSNIPIKKH 157
           + R  LLIY F K S+  I+ H
Sbjct: 330 VFRYGLLIYDFFKDSSFRIQHH 351


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 627 HQYYIHHYHPH 595
           HQ++   YHPH
Sbjct: 319 HQHHPSQYHPH 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,239
Number of Sequences: 438
Number of extensions: 2869
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)