Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18n13
         (367 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    26   2.1  
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    25   2.8  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   4.9  

>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 284 IFIMFMIK*QTVICLLLLCTNVASEKATENPVQYISYVLALRN 156
           +FI F +     +     C N+A   +T+N  +Y   VLAL N
Sbjct: 137 LFIAFKLTSDYSVAKKSFCENLAPSLSTKNLEKYEKIVLALLN 179


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 165 SKNIANVLDRILCRFFACHIC 227
           S+ + +  DR +CR F C IC
Sbjct: 22  SRGLVHFTDRKVCRSFLCGIC 42


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 135 LLFFERGITKSKNIANVLDRILCRFFACHIC 227
           L FF++G    +N  N  +R    FF C+ C
Sbjct: 5   LRFFKQGAILHENNTNFTERSSSVFFECNPC 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,082,900
Number of Sequences: 5004
Number of extensions: 17093
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)