Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18n13
         (367 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.1  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   2.6  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   2.6  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   3.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   3.4  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   6.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   6.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           20   8.0  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       20   8.0  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 141 FFERGITKSKNIANVLDRI 197
           + ERG TKS   AN++ ++
Sbjct: 516 WIERGTTKSMEAANIMSKL 534


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 28  CIFYSVLKLFSKHLRMKWK*YSSR 99
           C+    +K++ ++ RMKWK  ++R
Sbjct: 46  CLTERQIKIWFQNRRMKWKKENAR 69


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 279 YNVHD*ITNSNLSSSFMYKCG 217
           + VHD +TNS+    F++  G
Sbjct: 53  WEVHDPVTNSDTYIGFLFVLG 73


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 28  CIFYSVLKLFSKHLRMKWK 84
           C+    +K++ ++ RMKWK
Sbjct: 46  CLTERQIKIWFQNRRMKWK 64


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 28  CIFYSVLKLFSKHLRMKWK 84
           C+    +K++ ++ RMKWK
Sbjct: 308 CLTERQIKIWFQNRRMKWK 326


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 50  NYFRNI*E*NGNNIAQEQFYLN 115
           NY  NI   N NN   ++ Y N
Sbjct: 88  NYISNISNYNNNNNYNKKLYYN 109


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 50  NYFRNI*E*NGNNIAQEQFYLN 115
           NY  NI   N NN   ++ Y N
Sbjct: 326 NYISNISNYNNNNNYNKKLYYN 347


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 196 ILSNTLAMFLLFVMPLSKNN 137
           +LSN LAM+L   +  SK N
Sbjct: 499 VLSNKLAMYLYGSIDSSKIN 518


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 4  FNVITIYACIFYSVLKLFS 60
          FN   I + +FYSVL + S
Sbjct: 33 FNEGHIVSIVFYSVLMIIS 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,975
Number of Sequences: 438
Number of extensions: 1242
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)