Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18n12
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    28   1.2  
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...    27   2.0  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    27   2.7  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    26   4.7  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    26   4.7  
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    25   8.1  

>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 86  LPYINIPLHCVLDQLLVIYHSMRRHRLTK*ISSV 187
           LP+IN+PLH ++    + Y ++   R+T  IS+V
Sbjct: 369 LPFINVPLHTIIKLTPMTYETI-EERVTVPISAV 401


>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 512 YLNTYFKLRSFFCKEF 465
           YLNT FK   FFC+EF
Sbjct: 176 YLNTSFKHFVFFCREF 191


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 71   KTNLLLPYINIPLHCVLDQLLVIYHSMRRHRLTK*ISSVY*QSLVFTT 214
            KT   L YIN  L  +L   L+ Y+S +R +L   +S ++     FTT
Sbjct: 878  KTYGHLHYINFVLEKLLSSSLLTYNSSQRDKLLYEVSLLFKDLQEFTT 925


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 43  RVRKSLPKSKNQSSITLYK 99
           R +KS+PK +N+SS T+ K
Sbjct: 302 RKKKSIPKKQNESSSTIQK 320


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 445 PSETQTRNSLQKKDLNLKYVFKYHYGNALSLTRD 546
           PS T TR  +Q+ D  L  +F Y   N  S +RD
Sbjct: 302 PSLTDTRQLMQQLDQLLYTLFSYLDSNLKSTSRD 335


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 315 VSVNLIGIASILQHITEIQKGSFFFAHSAANRYCVVNTRL 196
           +SVN      +LQH+ ++ KG +F    A +   +   +L
Sbjct: 154 LSVNPCTAYCLLQHVVQLNKGDWFIQDGANSMVGIATIQL 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,598
Number of Sequences: 5004
Number of extensions: 52811
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)