Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18n10
         (302 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   1.1  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   1.4  
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    25   2.4  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    23   7.5  
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||...    23   7.5  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    23   9.9  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    23   9.9  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    23   9.9  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    23   9.9  

>SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 272 LLFNKFWFKSLELILQNCKYYCDKKIE 192
           L+F+  WF  L+ IL    Y  D KI+
Sbjct: 60  LIFDLIWFDDLQNILNQVTYELDDKIK 86


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 103 IHFNSLWKITKKCYLRT 153
           + FNSL  +  KCYLRT
Sbjct: 342 LSFNSLKSLCSKCYLRT 358


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 93  LNKDQRDLTEKLNHKISQTIRS 28
           +NKDQ+ L +KL  K  + IR+
Sbjct: 128 INKDQKKLVDKLRDKAIERIRN 149


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 134 RNVIYAHNNTNM 169
           R  +YAHNNT+M
Sbjct: 319 REFLYAHNNTDM 330


>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 319

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 93  LNKDQRDLTEKLNHKISQTIRSCNHKV 13
           L++ QRD   ++ H++S  I SC H++
Sbjct: 87  LDEVQRD---EIEHEVSSAISSCIHQI 110


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 239 ELILQNCKYYCDKKIEVN 186
           E+ILQN   +C + +E+N
Sbjct: 542 EIILQNLFLWCKQLVEIN 559


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = -2

Query: 268 FSTNFGLNL*NSFYKIANIIVIKRLKLINMFCTH-----VCVIMC 149
           FST++ L     F+  A +  I+ L ++  FC H     +C ++C
Sbjct: 248 FSTSWFLVQKPGFFLTARLDKIQALTIMIQFCAHLSLYNLCKVLC 292


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 85  FVQNMGIHFNSLWKITKKCYLRT**HK 165
           FV N G     ++ I K C LRT  HK
Sbjct: 643 FVHNRGRFATYVYFIIKDCVLRTLAHK 669


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 114 IKMDTHILNKDQRDLTEKLNHKISQTIRSCNHKVKPI 4
           +++D  I N       E +   ISQ +RS N  VK +
Sbjct: 725 LRIDLEISNTGPMSGAEIIQVYISQIVRSVNRPVKEL 761


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,142,889
Number of Sequences: 5004
Number of extensions: 19858
Number of successful extensions: 50
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)