Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18n10
         (302 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   1.9  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   2.5  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    20   7.7  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    20   7.7  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    20   7.7  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    20   7.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       20   7.7  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        20   7.7  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 152 HNNTNMSTKHVN*LQSFYHNNICNFVK 232
           HNN N +  + N   + Y+NN  N  K
Sbjct: 324 HNNNNYNNNNYNNNYNNYNNNNYNNYK 350


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 152 HNNTNMSTKHVN*LQSFYHN 211
           HNN N +  + N  +  Y+N
Sbjct: 91  HNNNNYNNNNYNNYKKLYYN 110


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +2

Query: 146 YAHNNTNMSTKHVN*LQSFYHN 211
           Y +NN N    + N  +  Y+N
Sbjct: 89  YNYNNNNYKKLYCNNYKKLYYN 110


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +2

Query: 146 YAHNNTNMSTKHVN*LQSFYHN 211
           Y +NN N    + N  +  Y+N
Sbjct: 89  YNYNNNNYKKLYCNNYKKLYYN 110


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +2

Query: 146 YAHNNTNMSTKHVN*LQSFYHN 211
           Y +NN N    + N  +  Y+N
Sbjct: 89  YNYNNNNYKKLYCNNYRKLYYN 110


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +2

Query: 152 HNNTNMSTKHVN*LQSFYHN 211
           HNN N    + N  +  Y+N
Sbjct: 91  HNNNNYKYNYNNNCKKLYYN 110


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 114 IKMDTHILNKDQRDLTEKLNHKISQTIRSCN 22
           IK  +H++N D     ++  H+I +T R  N
Sbjct: 517 IKNVSHVINYDLPKGIDEYVHRIGRTGRVGN 547


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 62 NLIIKYHKQFVH 27
          +++ KYH+QF H
Sbjct: 4  SMLPKYHQQFHH 15


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,523
Number of Sequences: 438
Number of extensions: 1339
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)