Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18n04
(632 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 235 1e-62
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 235 1e-62
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 112 2e-25
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 112 2e-25
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 110 9e-25
AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical... 101 4e-22
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 99 3e-21
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 97 9e-21
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 91 5e-19
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 91 8e-19
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 89 2e-18
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 85 5e-17
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 78 6e-15
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 74 1e-13
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 73 2e-13
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 73 2e-13
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 69 3e-12
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 66 2e-11
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 66 3e-11
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 65 5e-11
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 62 4e-10
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 60 1e-09
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 60 2e-09
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 55 5e-08
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 52 3e-07
Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical pr... 44 1e-04
U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin conju... 43 2e-04
Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical pr... 31 0.91
AF016665-9|AAC71177.1| 363|Caenorhabditis elegans Nuclear hormo... 30 1.2
Z81473-5|CAB03893.2| 139|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z82059-12|CAB04880.1| 622|Caenorhabditis elegans Hypothetical p... 29 2.8
U20783-1|AAC46845.1| 535|Caenorhabditis elegans unknown protein. 29 2.8
AL032665-2|CAA21772.1| 622|Caenorhabditis elegans Hypothetical ... 29 2.8
AF100307-11|AAC68929.1| 304|Caenorhabditis elegans Hypothetical... 29 2.8
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 29 3.7
AL032639-9|CAA21633.1| 303|Caenorhabditis elegans Hypothetical ... 28 4.8
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 235 bits (576), Expect = 1e-62
Identities = 105/112 (93%), Positives = 109/112 (97%)
Frame = +2
Query: 296 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 475
MALKRI +ELQDLGRDPPAQCSAGP G+DLFHWQATIMGP +SPYQGGVFFLTIHFPTDY
Sbjct: 1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60
Query: 476 PFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCD 631
PFKPPKVAFTTRIYHPNINSNGSICLDILR+QWSPALTISKVLLSICSLLCD
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD 112
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 235 bits (576), Expect = 1e-62
Identities = 105/112 (93%), Positives = 109/112 (97%)
Frame = +2
Query: 296 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 475
MALKRI +ELQDLGRDPPAQCSAGP G+DLFHWQATIMGP +SPYQGGVFFLTIHFPTDY
Sbjct: 1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60
Query: 476 PFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCD 631
PFKPPKVAFTTRIYHPNINSNGSICLDILR+QWSPALTISKVLLSICSLLCD
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD 112
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 112 bits (269), Expect = 2e-25
Identities = 46/107 (42%), Positives = 73/107 (68%)
Frame = +2
Query: 305 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 484
+R+ R+ + L DPPA S P +++ W+A I GP ++P++ G F L++ F +YP K
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 485 PPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLL 625
PP V F ++++HPN+ ++GSICLDIL+ +WSP ++ +L SI SLL
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLL 113
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 112 bits (269), Expect = 2e-25
Identities = 46/107 (42%), Positives = 73/107 (68%)
Frame = +2
Query: 305 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 484
+R+ R+ + L DPPA S P +++ W+A I GP ++P++ G F L++ F +YP K
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 485 PPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLL 625
PP V F ++++HPN+ ++GSICLDIL+ +WSP ++ +L SI SLL
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLL 113
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 110 bits (264), Expect = 9e-25
Identities = 55/107 (51%), Positives = 68/107 (63%)
Frame = +2
Query: 305 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 484
+RI +E Q L DP SA P + ++ I GP DSP+ GGVF L + P +YP
Sbjct: 7 RRIIKETQRLLADPVPGISANPDESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYPMA 66
Query: 485 PPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLL 625
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL
Sbjct: 67 APKVRFMTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALL 113
>AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical
protein F52C6.12 protein.
Length = 78
Score = 101 bits (242), Expect = 4e-22
Identities = 43/54 (79%), Positives = 48/54 (88%)
Frame = +2
Query: 296 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTI 457
MALKRI +EL DLGRDPPAQCS G G+DL+HWQATIMGP +SPYQGG+FFLTI
Sbjct: 1 MALKRIQKELHDLGRDPPAQCSTGSVGDDLYHWQATIMGPPESPYQGGIFFLTI 54
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 98.7 bits (235), Expect = 3e-21
Identities = 45/85 (52%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
Frame = +2
Query: 377 EDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICL 553
E+L + I GP D+PY GG+F L I P YPF PP V F+T+I+HPN++S G ICL
Sbjct: 34 ENLTEIKGHIRGPPDTPYAGGMFDLDIKIPDQYPFSPPNVKFSTKIWHPNVSSQTGVICL 93
Query: 554 DILRAQWSPALTISKVLLSICSLLC 628
DIL+ QW+ +LT+ VLLSI +L+C
Sbjct: 94 DILKDQWAASLTLRTVLLSIQALMC 118
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 97.1 bits (231), Expect = 9e-21
Identities = 51/125 (40%), Positives = 70/125 (56%), Gaps = 14/125 (11%)
Frame = +2
Query: 299 ALKRINRELQDLGRDPPAQCSAGPHGED-LFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 475
ALKR+ E ++L PP A P ED F W+ I GP ++ + GVF I FP DY
Sbjct: 5 ALKRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITGPEETCFANGVFPARITFPQDY 64
Query: 476 PFKPPKVAFTTRIYHPNINSNGSICLDILRA-------------QWSPALTISKVLLSIC 616
P PPK+ FT I+HPNI ++G +C+ IL A +WSP +I K+LLS+
Sbjct: 65 PLSPPKMRFTCGIFHPNIYADGRVCISILHAPGDDPTGYELSNERWSPVQSIEKILLSVV 124
Query: 617 SLLCD 631
S+L +
Sbjct: 125 SMLAE 129
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 91.5 bits (217), Expect = 5e-19
Identities = 44/125 (35%), Positives = 71/125 (56%), Gaps = 13/125 (10%)
Frame = +2
Query: 290 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 469
S AL+ + EL++L P + + ++LF W I GP + YQGG F +I FP+
Sbjct: 8 SSGALRALTMELKNLQSQPVEGFTIDVNEDNLFVWTVGIYGPPKTLYQGGYFKASIRFPS 67
Query: 470 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRA-------------QWSPALTISKVLLS 610
+YP+ PP + FTT+++HPN+ NG +C+ IL + +W+P ++ +LLS
Sbjct: 68 NYPYSPPSMKFTTKVWHPNVYENGDLCISILHSPIDDPQSGELACERWNPTQSVRTILLS 127
Query: 611 ICSLL 625
+ SLL
Sbjct: 128 VISLL 132
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 90.6 bits (215), Expect = 8e-19
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 14/121 (11%)
Frame = +2
Query: 311 INRELQDLGRDPPAQCSAG-PHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKP 487
+ ++L D+ R P SAG D++ W+ ++GP D+ Y+GG F + FP DYP KP
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 488 PKVAFTTRIYHPNINSNGSICLDIL-------------RAQWSPALTISKVLLSICSLLC 628
PK+ F + I+HPNI+ G++C+ IL +W P T+ +LLS+ S+L
Sbjct: 68 PKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLT 127
Query: 629 D 631
D
Sbjct: 128 D 128
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 89.4 bits (212), Expect = 2e-18
Identities = 45/111 (40%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Frame = +2
Query: 299 ALKRINRELQDLGR-DPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 475
A +R+ +EL DL A + +L W ++ P PY G F + I FP DY
Sbjct: 3 ATRRLQKELGDLKNCGVKAYENVECEETNLLKWTVLLI-PDKEPYNKGAFKVGITFPVDY 61
Query: 476 PFKPPKVAFTTRIYHPNINSNGSICLDILRAQ-WSPALTISKVLLSICSLL 625
PFKPPKVAF T+IYHPN++ G CL I+ A+ W PA +V++++ SL+
Sbjct: 62 PFKPPKVAFETKIYHPNVDEEGKFCLPIVTAENWKPATKTEQVMMALLSLI 112
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 84.6 bits (200), Expect = 5e-17
Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 20/133 (15%)
Frame = +2
Query: 290 SQMALKRINRELQDLGRDPPAQCSAGPHGE----DLFHWQATIMGPVDSPYQGGVFFLTI 457
S +AL R+ R+ +++ AG H E +L + I GP +PY GG F + +
Sbjct: 16 SNLALARVTRKCKEVANASDIT-EAGIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEIKV 74
Query: 458 HFPTDYPFKPPKVA---------------FTTRIYHPNINSN-GSICLDILRAQWSPALT 589
P YPF+PPKV F TRI+HPNI+S G+ICLDIL+ +W+ +LT
Sbjct: 75 DIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTASLT 134
Query: 590 ISKVLLSICSLLC 628
+ VLLS+ ++LC
Sbjct: 135 LRTVLLSLQAMLC 147
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 77.8 bits (183), Expect = 6e-15
Identities = 45/116 (38%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Frame = +2
Query: 290 SQMALKRINRELQDLGRDPPAQCSAG--PHGEDLFHWQATIMGPVDSPYQGGVFFLTIHF 463
S A +R+ +EL L + P DL W+ ++G + Y G VF L F
Sbjct: 2 SDAATRRLMKELAQLKSEAPEGLLVDNTSTSNDLKQWKIGVVGAEGTLYAGEVFMLQFTF 61
Query: 464 PTDYPFKPPKVAFT--TRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLL 625
YPF P+V F T HP+I SNG ICL IL W+PAL++ V LSI S+L
Sbjct: 62 GPQYPFNSPEVMFVGETIPAHPHIYSNGHICLSILSDDWTPALSVQSVCLSILSML 117
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 73.7 bits (173), Expect = 1e-13
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Frame = +2
Query: 290 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 469
S +AL+R+ ++ Q L ++P A P ++ W+ I+G +PY+GG++ + FP
Sbjct: 6 STVALQRLKKDYQRLLKEPVPFMKAAPLETNILEWRYIIIGAPKTPYEGGIYMGKLLFPK 65
Query: 470 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQ---WSPALTISKVLLSICSLLCD 631
D+PFKPP + T + +N +CL I W+PA T+S ++ + S + D
Sbjct: 66 DFPFKPPAILMLTP--NGRFQTNTRLCLSISDYHPDTWNPAWTVSTIITGLMSFMND 120
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 72.5 bits (170), Expect = 2e-13
Identities = 29/84 (34%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Frame = +2
Query: 380 DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI 559
+LF+W+ I G D+ ++GG++ + + F D+P PPK F ++HPN+ +G++CL +
Sbjct: 37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSL 96
Query: 560 L--RAQWSPALTISKVLLSICSLL 625
L W P+++I ++L+ I LL
Sbjct: 97 LDENKDWKPSISIKQLLIGIQDLL 120
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 72.5 bits (170), Expect = 2e-13
Identities = 29/84 (34%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Frame = +2
Query: 380 DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI 559
+LF+W+ I G D+ ++GG++ + + F D+P PPK F ++HPN+ +G++CL +
Sbjct: 37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSL 96
Query: 560 L--RAQWSPALTISKVLLSICSLL 625
L W P+++I ++L+ I LL
Sbjct: 97 LDENKDWKPSISIKQLLIGIQDLL 120
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 68.9 bits (161), Expect = 3e-12
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Frame = +2
Query: 395 QATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICL-DILRA 568
Q I G ++PY+GG+F L I YPFK P V F T+I+HP+++ +G+ICL D+
Sbjct: 382 QGIIKGVEETPYEGGIFELDIKIGESYPFKAPTVKFITKIWHPSVSPFDGTICLHDVDNG 441
Query: 569 QWSPALTISKVLLSICS 619
W ++TI KVL+ I S
Sbjct: 442 VWPVSMTIYKVLIVIQS 458
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 66.1 bits (154), Expect = 2e-11
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 12/82 (14%)
Frame = +2
Query: 404 IMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR-----IYHPNINSNGSICLDIL-- 562
I GP D+PY G+F I FPT YPF PPK AF T ++PN+ ++G ICL IL
Sbjct: 449 ISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGT 508
Query: 563 -----RAQWSPALTISKVLLSI 613
+W+P ++ +VL+SI
Sbjct: 509 WEGRPEEKWNPYCSLMQVLVSI 530
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 65.7 bits (153), Expect = 3e-11
Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Frame = +2
Query: 410 GPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRAQWSPAL 586
GP D+ Y+ GV+ + + P YPFK P + F +I+HPNI+ ++G++CLD++ W+
Sbjct: 41 GPKDTAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTVCLDVINQAWTALY 100
Query: 587 TISKV 601
++ +
Sbjct: 101 DLTNI 105
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 64.9 bits (151), Expect = 5e-11
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Frame = +2
Query: 260 VESQYNST*NSQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGG 439
+ QYN+ ++R+ +E +L R P A P ++LF W TI G + + ++GG
Sbjct: 1 MSEQYNT---KNAGVRRLMKEAMEL-RQPTEMYHAQPMEDNLFEWHFTIRGTLGTDFEGG 56
Query: 440 VFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL---RAQWSPALTISKVLLS 610
++ I FP DYP KPP + T + N +CL I W P+ +I LL+
Sbjct: 57 IYHGRIIFPADYPMKPPNLILLTP--NGRFELNKKVCLSISGYHPETWLPSWSIRTALLA 114
Query: 611 ICSLL 625
+ L
Sbjct: 115 LIGFL 119
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 61.7 bits (143), Expect = 4e-10
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Frame = +2
Query: 374 GEDLF-HWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 550
G D++ W T+ GP SP++GG + ++++F +P PP F T ++HPN++ GSI
Sbjct: 64 GADIWCSWICTVPGPRGSPWEGGEYEVSVNFHK-WPIIPPICEFKTPLHHPNVDLRGSIY 122
Query: 551 LDILRAQ-WSPALTISKVLLSICSLL 625
L +L + WS ++ K+L I +LL
Sbjct: 123 LKMLEQEHWSSETSLKKLLREISNLL 148
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Frame = +2
Query: 290 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 469
S A++R+ ++ L +DP A P+ +++ W + G D+P+ GG ++ + F
Sbjct: 17 SSSAVRRLQKDYAKLMQDPVDGIKALPNEDNILEWHYCLRGSPDTPFYGGYYWGKVIFKE 76
Query: 470 DYPFKPPKVAFTTRIYHPNINSNGSICL---DILRAQWSPALTISKVLLSICSLL 625
++P+ PP + T + +N +CL D W+P T+S +L+ + S +
Sbjct: 77 NFPWSPPAITMITP--NGRFQTNTRLCLSISDYHPESWNPGWTVSAILIGLHSFM 129
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Frame = +2
Query: 413 PVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQ------W 574
P + Y+GG F I P +Y PP V T+++HPNIN +GSICL ILR W
Sbjct: 67 PQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYGW 126
Query: 575 SPALTISKVLLSICSLLCD 631
P ++ V+ + SL D
Sbjct: 127 RPTRNLTDVVHGLVSLFND 145
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 54.8 bits (126), Expect = 5e-08
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Frame = +2
Query: 302 LKRINRELQDLGRDPPAQCSAGPHGE---DLFHWQATIMGPVDSPYQGGVFFLTIHFPTD 472
L RI +E+ DL ++ E D+F ++ G + Y+ +F LT+ +
Sbjct: 15 LSRIRKEIADLAKNKRRFIKDFRKIEKCKDIFQFKIIGDGVL---YKNMIFTLTLDVNVE 71
Query: 473 YPFKPPKVAFTTRIYHPNINS-NGSICLD-ILRAQWSPALTISKVLLSICSLL 625
YPFKPP + F +YHPN++ +C +L+ W P T+ VLL++ LL
Sbjct: 72 YPFKPPYLKFCHNVYHPNVDPVTCELCSPMLLQENWKPETTMEDVLLNLIVLL 124
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 52.4 bits (120), Expect = 3e-07
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Frame = +2
Query: 383 LFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSI---C 550
L W A+I+GP +PY+ ++ L I +YP +PP V FTT+++ +N SNG I
Sbjct: 38 LTRWTASIIGPPRTPYESRIYNLQIQCGGNYPREPPTVRFTTKVHMVGVNQSNGVIDKRN 97
Query: 551 LDILRAQWSPALTISKVLLSI 613
L LR WS + I VL I
Sbjct: 98 LTTLR-NWSNSYMIKTVLEDI 117
>Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical
protein F26H9.7 protein.
Length = 219
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 383 LFHWQATIMGPVDSPYQGGVFFLTIHF-PTDYPFKPPKVAFTTRIYHPNINSNGSICLDI 559
LFH I GPV S Y+GG FF I+ P P+V F T I+HPN+ G+ D+
Sbjct: 63 LFH--VIIDGPVGSIYEGGTFFADINIQPYQNHSLIPRVCFHTFIFHPNLGKYGN--WDM 118
Query: 560 LRAQW 574
QW
Sbjct: 119 RGIQW 123
>U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein22 protein.
Length = 182
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +2
Query: 404 IMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLD 556
I GP D+PY+ GVF + + FP +YP P++ F T I++ + S G + ++
Sbjct: 35 IAGPADTPYETGVFEVDLTFPDNYPNALPQIKFQTLIWNCAVEPSTGQVHIE 86
>Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical
protein Y69H2.6 protein.
Length = 292
Score = 30.7 bits (66), Expect = 0.91
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Frame = +2
Query: 320 ELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKP--PK 493
E ++ R P P + F W I + GG+F IH P ++P P+
Sbjct: 27 EFVEVCRAPIDGIFVSPSANNKFLWFGVIFVR-KGIFGGGIFRFNIHIPLEFPDASDLPR 85
Query: 494 VAF-TTRIYHPNI-NSNGSICLD 556
V F + ++HP I + +CL+
Sbjct: 86 VIFEQSNLFHPLICTKSKELCLN 108
>AF016665-9|AAC71177.1| 363|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 166 protein.
Length = 363
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 446 FLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSIC 616
F I+ P P + ++ +I + +++ + D LR QW P ++ KVL+ C
Sbjct: 300 FCLINNPRSAPSRLLEIISINQILNRQFHASYKL-FDALRKQWDPTMSFQKVLVESC 355
>Z81473-5|CAB03893.2| 139|Caenorhabditis elegans Hypothetical
protein C17D12.5 protein.
Length = 139
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +2
Query: 443 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSL 622
+ +T+ P +PF PP + T + N L + QW P+ I VL+ CS+
Sbjct: 51 YIVTVAIPPKFPFSPPAITCKT-------DKNMKF-LFLEENQWKPSTGIVAVLIEACSV 102
Query: 623 L 625
+
Sbjct: 103 I 103
>Z82059-12|CAB04880.1| 622|Caenorhabditis elegans Hypothetical
protein T27E9.7 protein.
Length = 622
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 111 IILTYNTKEIIIGTKHELIEIKHFSANGEQQTGKSTI 1
+ +T++ +EI++ TK EL + + G +GKSTI
Sbjct: 87 LTITFHGREIVVDTKLELNRGRRYGLIGLNGSGKSTI 123
>U20783-1|AAC46845.1| 535|Caenorhabditis elegans unknown protein.
Length = 535
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 111 IILTYNTKEIIIGTKHELIEIKHFSANGEQQTGKSTI 1
+ +T++ +EI++ TK EL + + G +GKSTI
Sbjct: 86 LTITFHGREIVVDTKLELNRGRRYGLIGLNGSGKSTI 122
>AL032665-2|CAA21772.1| 622|Caenorhabditis elegans Hypothetical
protein T27E9.7 protein.
Length = 622
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 111 IILTYNTKEIIIGTKHELIEIKHFSANGEQQTGKSTI 1
+ +T++ +EI++ TK EL + + G +GKSTI
Sbjct: 87 LTITFHGREIVVDTKLELNRGRRYGLIGLNGSGKSTI 123
>AF100307-11|AAC68929.1| 304|Caenorhabditis elegans Hypothetical
protein T12B5.3 protein.
Length = 304
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 484 FERVVCREMYGKEENSSLIRTVNWA--HNCGLPMEQIF 377
FER+ C E + +N+ T W HNC +P+EQ+F
Sbjct: 185 FERLACLEQW---KNAKTFETP-WVLVHNCQIPIEQLF 218
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
F46C3.3 protein.
Length = 2557
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +3
Query: 435 EEFSSLPYISLQTTLSNHQKLHSQHVFIILT*TVMVPSVLTFCVHSGHQRSPYPKCCSQS 614
EE++ + + T Q Q+V +++T ++M PS++T + G Q + P+
Sbjct: 1202 EEYTPMNFAPPPTFTYPQQMPMMQYVPVMMTSSMMTPSMMTPSMMPGQQIAMVPQQMMMQ 1261
Query: 615 AHF 623
HF
Sbjct: 1262 PHF 1264
>AL032639-9|CAA21633.1| 303|Caenorhabditis elegans Hypothetical
protein Y38F1A.8 protein.
Length = 303
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 290 YFMLSYTDFQLDNETVSQGPLIRDCKMAPCLNAKVPPKSFYVVIVKSQQ 144
YF+++YT + E VS +CK P +N +PP S+ + I + Q+
Sbjct: 59 YFVVAYT-YLFQFEKVSN---FTECKECPNMNITLPPVSYSIGIWQPQK 103
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,564,728
Number of Sequences: 27780
Number of extensions: 349026
Number of successful extensions: 928
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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