Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18n01
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    29   0.51 
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    29   0.68 
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c...    27   2.7  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    26   3.6  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   4.8  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    25   6.3  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   6.3  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   8.3  

>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 3   VLTINNFPFAFWQRISLNQIVFAELHNYNFSSFFRTGYY 119
           ++T+ +F   FW      ++VF E+H   F+S++  G Y
Sbjct: 64  LITVLSFITRFWNLNLPGEVVFDEVHFGKFASYYLQGKY 102


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 344 LEYSSYFRNIQTVMNYIYIGTF 279
           L  S++FRNI T++ + + GTF
Sbjct: 114 LHQSNFFRNIGTILTFAFAGTF 135


>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 169

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 255 KCKMKLHTERTYVYIIHDSLNVSKIRRI 338
           KC M+++ +  Y+ I+  S+N+ K++ I
Sbjct: 130 KCAMEVNIKTNYIVILLTSINLKKLKMI 157


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 45  ISLNQIVFAELHNYNFSSFFRTGYYNGIITNTFLQV*NDYVYVYGG 182
           ISLNQ +    H Y+FSS     ++  II N   Q+ +D + +  G
Sbjct: 305 ISLNQKLCGYAHLYSFSSVKSVVHWLQIIKNCTFQLYDDDMALLAG 350


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +1

Query: 394  NNNLPSYVDEHEEVMIH--ETLGN 459
            NNN+   VDEHEE   +  ETLGN
Sbjct: 1719 NNNMFDLVDEHEERPKNRKETLGN 1742


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -2

Query: 354 LVESRIFFLFSKHSNCHELYIHRYVQYVVS 265
           ++ SRIF L  +H      Y+++Y+ Y+++
Sbjct: 492 VIASRIFELGMRHFGDVPAYVYKYLSYLIA 521


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 259 HFPSNITFSHYSKMF*NVSSNVACYLPP-*TYT*SFHTCKNVFVIIPL 119
           H   N TF  YS++  NV +++    PP    T  F + K+  V +P+
Sbjct: 126 HVSQNNTFQSYSELSPNVETSLTMKTPPAHASTPKFRSHKSHRVAVPM 173


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 536 APQCGWRYSESWHSKLELD 592
           AP   W    SWHS+LELD
Sbjct: 771 APSNSW--FNSWHSRLELD 787


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,655,104
Number of Sequences: 5004
Number of extensions: 56211
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)