Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18m23
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0239 + 22244565-22245144,22245249-22245594,22246847-222468...    31   0.98 
02_01_0314 + 2106976-2107658,2107792-2107931,2108367-2108636,210...    30   1.3  
06_03_1080 + 27436389-27436742,27437573-27437804,27437911-274381...    28   5.2  
03_01_0035 - 322993-323280,323385-323528,324055-324180,324827-32...    28   6.9  
09_04_0161 - 15232074-15232139,15232299-15232406,15233417-152335...    27   9.2  

>03_05_0239 +
           22244565-22245144,22245249-22245594,22246847-22246868,
           22246982-22247054,22247131-22247233,22247312-22247366,
           22247448-22247542,22247913-22248204,22248292-22248495,
           22248583-22248615
          Length = 600

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 399 GHGVNSRGQCSGRRPSRDCKTTL 331
           GHG  S+  C GRR S DC T L
Sbjct: 485 GHGCWSKSYCDGRRGSPDCGTML 507


>02_01_0314 +
           2106976-2107658,2107792-2107931,2108367-2108636,
           2109938-2110254
          Length = 469

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/60 (35%), Positives = 32/60 (53%)
 Frame = -2

Query: 456 SCFRAVAAFERRKRSPFRKGHGVNSRGQCSGRRPSRDCKTTLSYRFSQLSYPCIR*RSSF 277
           S F  +A F+++KRS  R+ H  N+R     R+P  +  +  S R S L Y   R ++SF
Sbjct: 227 SRFHGLAEFDQKKRSCRRRLHDHNAR----RRKPQPEAISLSSSRLSTLLYGDARQQASF 282


>06_03_1080 +
           27436389-27436742,27437573-27437804,27437911-27438159,
           27438467-27438517,27438676-27438936,27439019-27439071,
           27439201-27439315,27441666-27441920,27442423-27443480
          Length = 875

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +2

Query: 434 AATARKHDSRLFEMAAESNRCAPNRHQISFFDGNTASQCNNDRRAHGIQKQRXTPKNNGG 613
           +A A   D  +  + A S+    N+H  +F  G T S C  D  A G  +++    N+GG
Sbjct: 738 SAAASGEDEAMSVIPATSSSGGSNQH--AFDAGTTTSSCEIDATAGGGGRRKVRFDNDGG 795


>03_01_0035 -
           322993-323280,323385-323528,324055-324180,324827-324882,
           325497-325517,327153-327420,327904-329787
          Length = 928

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = -2

Query: 558 SLLHCEAVFPSKNDI*CRFGAHRLDSAAISNSLES----CFRAVAAFERRKRSPFRKGHG 391
           SLLHC     +   +    G H+L S+++   LE        AV A E+RK    ++   
Sbjct: 666 SLLHCSE---ASTAVSIEKGKHKLYSSSLKMLLEEEVSQLIEAVTAEEKRKTKKRKEAAV 722

Query: 390 VNSRGQCSGRRP 355
              +GQ  G +P
Sbjct: 723 AKGQGQFGGLQP 734


>09_04_0161 -
           15232074-15232139,15232299-15232406,15233417-15233506,
           15233617-15233733,15234408-15234527,15234930-15236168
          Length = 579

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -2

Query: 495 HRLDSAAISNSLESCFRAVAAFERRKRSPFRKGHGVNSRGQCSGRRPSRD 346
           ++ D    S SL+      +    RKRSP R+    N   QC   +PS D
Sbjct: 152 NKKDKVVPSGSLDQTKGQASVIAERKRSPLRR---KNIGEQCENAQPSED 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,910,247
Number of Sequences: 37544
Number of extensions: 338724
Number of successful extensions: 811
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)