Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18m21
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   101   6e-23
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    31   0.072
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   3.6  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    25   6.3  
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    25   6.3  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   6.3  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   6.3  
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo...    25   8.3  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    25   8.3  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  101 bits (242), Expect = 6e-23
 Identities = 56/133 (42%), Positives = 74/133 (55%), Gaps = 3/133 (2%)
 Frame = +1

Query: 106 RAIAFLSTET-IRGNITFTQV-QDGKVHVQGGITGLPPG-EYGFHVHEKGDLSGGCVSTG 276
           RA+A L  ++ + G +TF QV Q+ +V V   + G     + GFH+H+ GD + GC S G
Sbjct: 3   RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62

Query: 277 SHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHE 456
            HFNPE K HG      RHVGDLGN+  D     +    D  ISL G + IIGR +V+H 
Sbjct: 63  PHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHA 122

Query: 457 KADDYGKSDHPDS 495
             DD GK    +S
Sbjct: 123 GEDDLGKGTSEES 135


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 31.5 bits (68), Expect = 0.072
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +1

Query: 316  NDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIG 435
            ND   H GDLG ++ D N        DDQI L G    IG
Sbjct: 3092 NDRIYHTGDLGRLLKDNNSLEFCGRTDDQIKLRGQRIEIG 3131


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 331 HVGDLGNVVFDENHYSRIDLVDDQI 405
           HV + GNV FD    S + L+D ++
Sbjct: 102 HVNEDGNVAFDSEFDSNLKLLDSEL 126


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 85  HGFTTPSRAIAFLST 129
           HGF+TP +AI+ +ST
Sbjct: 143 HGFSTPQKAISAVST 157


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 101 RPAPL-PFYPQKRLEATSHSLRFKMGRSTFRGASLGCL 211
           +P PL PF+   R    SHSLR K+     +GAS+  L
Sbjct: 118 QPFPLNPFFKPPR--PISHSLRMKITDEYLQGASIEVL 153


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 260 PPLRSPFSWTWKPYSPGGSP 201
           PP  S F+W + PY+   SP
Sbjct: 410 PPEPSHFAWAFDPYNATASP 429


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 274 GSHFNPEHKDHGHPNDVNRHV 336
           G H +P+H DH   + ++R V
Sbjct: 299 GLHLDPDHWDHSEESRIDREV 319


>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
 Frame = +1

Query: 274 GSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQ----ISLSGPHGIIGRA 441
           G   +PE +   HP+ V  H   + +V    + +S  D  D      + ++ P G   R 
Sbjct: 117 GKSLHPERQTSSHPHQVTAHKHLVCSVDLGLDRFSIFDAEDTSSDPVVVVNVPAGYGPRH 176

Query: 442 VVLHE 456
           +V H+
Sbjct: 177 IVFHK 181


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
          Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 14 KPTRKXKCCFNSHSWLRSLWRR 79
          KP    + C N H    SLWRR
Sbjct: 4  KPAPFGQSCSNCHKTTTSLWRR 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,514
Number of Sequences: 5004
Number of extensions: 42612
Number of successful extensions: 73
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)