Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18m21
         (496 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   2.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.5  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   9.5  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 277 SHFNPEHKDHGHPNDVNRHV 336
           S F+ + KD G PND N ++
Sbjct: 345 SSFDFQSKDQGPPNDGNGNI 364


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +1

Query: 205 LPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHP 315
           L P  +      K DLS   ++ G+ F      HG P
Sbjct: 404 LTPKRFHSRAASKEDLSPSSLADGARFGGSCLIHGPP 440


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +1

Query: 205 LPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHP 315
           L P  +      K DLS   ++ G+ F      HG P
Sbjct: 404 LTPKRFHSRAASKEDLSPSSLADGARFGGSCLIHGPP 440


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 178 VHVQGGITGL 207
           +HV GG+TGL
Sbjct: 205 IHVVGGLTGL 214


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 232 VHEKGDLSGGC 264
           +H++G LS GC
Sbjct: 314 MHQRGKLSAGC 324


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 388 LVDDQISLSGPHGIIGRAVVLH 453
           ++D+ I LSG     G  V+LH
Sbjct: 401 ILDEPIELSGYRLTAGTVVLLH 422


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,307
Number of Sequences: 438
Number of extensions: 3163
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)