Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18m16
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...   226   2e-60
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   3.0  
SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces ...    25   9.2  

>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score =  226 bits (552), Expect = 2e-60
 Identities = 110/171 (64%), Positives = 132/171 (77%)
 Frame = +2

Query: 125 ENVGILAMELYFPSQYVDQTELEKFDEVSTGKYTIGLGQSKMGFCSDREDINSICLTALH 304
           +++GI  + LY P+QYV+Q  LE  D VSTGKYTIGLG +KM F  DREDI S  LTAL 
Sbjct: 6   KDIGIKGLVLYTPNQYVEQAALEAHDGVSTGKYTIGLGLTKMAFVDDREDIYSFGLTALS 65

Query: 305 RLIDKQKINLHDIGRLEVGTETIIDKSKSVKTFLMTLFAKEGATDIEGIDTTNACYGGTA 484
           +LI + +I++  IGRLEVGTETIIDKSKSVK+ LM LF      ++EGID  NACYGG  
Sbjct: 66  QLIKRYQIDISKIGRLEVGTETIIDKSKSVKSVLMQLFGDN--HNVEGIDCVNACYGGVN 123

Query: 485 ALFNAINWVESSSWDGRKAIVVAGDIAVYGKGPARPTGGAGAVAMLIGPDA 637
           ALFN I+W+ESS+WDGR  IVVAGDIA+Y KG ARPTGGAG VA+L+GP+A
Sbjct: 124 ALFNTIDWIESSAWDGRDGIVVAGDIALYAKGNARPTGGAGCVALLVGPNA 174


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 137 ILAMELYFPSQYVDQTELEKFDEVSTGK 220
           I+  +  + S  +DQT L  F E+ TGK
Sbjct: 375 IILFKCRYQSSEIDQTTLRAFGEICTGK 402


>SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 23/70 (32%), Positives = 32/70 (45%)
 Frame = +2

Query: 254 FCSDREDINSICLTALHRLIDKQKINLHDIGRLEVGTETIIDKSKSVKTFLMTLFAKEGA 433
           FCS   DIN+      H+L+D      HD  R +V  + ++DK  +  T L     KE A
Sbjct: 121 FCSYFPDINAAITKRNHKLLD------HDAMRAKV--QKLVDKPSNDTTKLPRT-EKEAA 171

Query: 434 TDIEGIDTTN 463
              E  +T N
Sbjct: 172 MAKEVYETLN 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,490,453
Number of Sequences: 5004
Number of extensions: 48223
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)