Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18m16
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0128 + 995103-995174,996500-996606,996909-997041,997127-99... 235 2e-62
09_05_0013 + 20067115-20067183,20067585-20067691,20067905-200680... 227 8e-60
08_02_1460 + 27295201-27295269,27295968-27296074,27296252-272963... 195 2e-50
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 36 0.021
04_04_1342 + 32775582-32775796,32776589-32776794,32777356-327774... 34 0.11
07_01_0954 - 8016804-8016905,8017409-8017469,8017543-8017649,801... 30 1.8
04_04_1247 - 32043776-32043880,32044296-32044505,32044595-320451... 30 1.8
06_03_0854 + 25400855-25403741,25406174-25407708 29 2.4
03_05_1075 - 30174725-30175363 28 7.2
09_04_0494 + 18056679-18056819,18058307-18058374,18058708-180588... 27 9.5
06_03_0395 - 20354713-20355570 27 9.5
03_01_0165 + 1335444-1335747,1335890-1336167,1337440-1337496 27 9.5
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 27 9.5
01_06_0628 + 30707353-30707548,30707846-30707958,30708090-307081... 27 9.5
01_03_0262 - 14387045-14387187,14387334-14387420,14387439-14387496 27 9.5
>03_01_0128 +
995103-995174,996500-996606,996909-997041,997127-997270,
997589-997747,997865-997938,998024-998099,998476-998531,
998651-998738,998824-998964,999057-999206,999320-999476,
1001183-1001773,1002673-1003532
Length = 935
Score = 235 bits (575), Expect = 2e-62
Identities = 110/176 (62%), Positives = 138/176 (78%)
Frame = +2
Query: 110 MGGKVENVGILAMELYFPSQYVDQTELEKFDEVSTGKYTIGLGQSKMGFCSDREDINSIC 289
M + ++VGILAM++YFP V Q ELE D VS GKYTIGLGQ M FC++ ED+ S+
Sbjct: 1 MAAERKDVGILAMDIYFPPTCVLQDELENHDGVSKGKYTIGLGQDSMAFCTEVEDVISMS 60
Query: 290 LTALHRLIDKQKINLHDIGRLEVGTETIIDKSKSVKTFLMTLFAKEGATDIEGIDTTNAC 469
LT + L++ KI+ IGRLEVG+ET+IDKSKS+KT+LM +F + G TDIEG+D++NAC
Sbjct: 61 LTVVKSLLENYKIDPKCIGRLEVGSETVIDKSKSIKTWLMQIFEECGNTDIEGVDSSNAC 120
Query: 470 YGGTAALFNAINWVESSSWDGRKAIVVAGDIAVYGKGPARPTGGAGAVAMLIGPDA 637
YGGTAALFN +NWVES+SWDGR +VV D AVY +GPARPTGGA A+AMLIGP+A
Sbjct: 121 YGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPNA 176
>09_05_0013 +
20067115-20067183,20067585-20067691,20067905-20068037,
20068163-20068306,20068415-20068573,20068710-20068783,
20068907-20068982,20069100-20069155,20069346-20069433,
20069508-20069648,20069737-20069886,20070165-20070398
Length = 476
Score = 227 bits (554), Expect = 8e-60
Identities = 108/176 (61%), Positives = 136/176 (77%)
Frame = +2
Query: 110 MGGKVENVGILAMELYFPSQYVDQTELEKFDEVSTGKYTIGLGQSKMGFCSDREDINSIC 289
M G+ ++VGILAM++YFP V Q LE D S GKYTIGLGQ M FCS+ ED+ S+
Sbjct: 1 MDGR-KDVGILAMDIYFPPTCVLQESLEAHDGASKGKYTIGLGQDCMAFCSEVEDVISMS 59
Query: 290 LTALHRLIDKQKINLHDIGRLEVGTETIIDKSKSVKTFLMTLFAKEGATDIEGIDTTNAC 469
+T + L+ K K++ IGRLEVG+ET+IDKSKS+KT+LM +F + G TDIEG+D++NAC
Sbjct: 60 MTVVTSLLKKYKVDPKLIGRLEVGSETVIDKSKSIKTWLMQIFEECGNTDIEGVDSSNAC 119
Query: 470 YGGTAALFNAINWVESSSWDGRKAIVVAGDIAVYGKGPARPTGGAGAVAMLIGPDA 637
YGGTAAL N +NWVES+SWDGR +VV D AVY +GPARPTGGA A+AMLIGP+A
Sbjct: 120 YGGTAALLNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPNA 175
>08_02_1460 +
27295201-27295269,27295968-27296074,27296252-27296384,
27296621-27296714,27296828-27297030,27297167-27297240,
27297331-27297406,27297530-27297585,27297939-27298026,
27298115-27298255,27298338-27298487,27299015-27299221
Length = 465
Score = 195 bits (476), Expect = 2e-50
Identities = 98/172 (56%), Positives = 123/172 (71%), Gaps = 2/172 (1%)
Frame = +2
Query: 128 NVGILAMELYFPSQYVDQTELEKFDEVSTGKYTIGLGQSKMGFCSDREDINSICLTALHR 307
+VGILAM++YFP V Q LE D S GKYTIGLGQ M +CS+ ED+ S+ LT +
Sbjct: 6 DVGILAMDIYFPPACVHQEALEAHDGASKGKYTIGLGQDCMAYCSEVEDVISMSLTVVAS 65
Query: 308 LIDKQKINLHDIGRLEVGTETIIDKSKSVKTFLMTLFAKEGATDIEGIDTTNACYGGTAA 487
L+ K I+ IGRLEVG+ET+IDKSKS+KT+LM +F + G TDIEG+D++NACYGGTAA
Sbjct: 66 LLKKYNIDPKQIGRLEVGSETVIDKSKSIKTWLMHIFEESGNTDIEGVDSSNACYGGTAA 125
Query: 488 LFNAINWVES--SSWDGRKAIVVAGDIAVYGKGPARPTGGAGAVAMLIGPDA 637
L N +NWVE+ W I+ VY +GPARPTGGA A+AMLIGP+A
Sbjct: 126 LLNCVNWVETLLIQW----PILCNYYDQVYAEGPARPTGGAAAIAMLIGPNA 173
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 36.3 bits (80), Expect = 0.021
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Frame = +2
Query: 200 DEVSTGKYTIGLGQSKMGFCSDREDINSICLTALHRLIDKQKINLHDIGRLEVGTETIID 379
D V Y + +SK G D + + LIDK K+N ++G + VGT
Sbjct: 50 DVVIVAAYRTAICKSKRGGFKDTP-AEDLLVPVFKALIDKTKLNPSEVGDIVVGTVLAPG 108
Query: 380 KSKSVKTFLMTLFAKEGATDIEGIDTTN-ACYGGTAALFNAINWVESSSWD 529
++++ + +A G D + T N C G A+ N + +++ +D
Sbjct: 109 SQRAIECRMAAFYA--GFPDTVPLMTVNRQCSSGLQAVANVASNIKAGLYD 157
>04_04_1342 +
32775582-32775796,32776589-32776794,32777356-32777492,
32778758-32778860,32778961-32779079,32779282-32779346,
32779426-32779642,32779713-32779934
Length = 427
Score = 33.9 bits (74), Expect = 0.11
Identities = 35/152 (23%), Positives = 55/152 (36%)
Frame = +2
Query: 104 VNMGGKVENVGILAMELYFPSQYVDQTELEKFDEVSTGKYTIGLGQSKMGFCSDREDINS 283
V MG K+ G PS V +L K E S G S E +
Sbjct: 93 VGMGSKLIGCGSAT-----PSLSVSNDDLSKIVETSDEWIAARTGIRNRRVLSGNETLRE 147
Query: 284 ICLTALHRLIDKQKINLHDIGRLEVGTETIIDKSKSVKTFLMTLFAKEGATDIEGIDTTN 463
+ + A + ++ ++N D+ + + T T D L A+ G + G D T
Sbjct: 148 LSVQAAKKALEMAQVNADDVDLVLLCTSTPDDLFGGAAQVL----AEVGCANAFGFDITA 203
Query: 464 ACYGGTAALFNAINWVESSSWDGRKAIVVAGD 559
AC G L A +++ R +V+ D
Sbjct: 204 ACSGFIIGLITATRFIKGGGI--RNILVIGAD 233
>07_01_0954 -
8016804-8016905,8017409-8017469,8017543-8017649,
8018278-8018382,8018460-8018546,8018631-8018711,
8018872-8018944,8019288-8019400,8019695-8019788,
8020060-8020115,8020212-8020295,8020384-8020476,
8020592-8020765,8020956-8021099,8021225-8021380
Length = 509
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 179 QTELEKFDEVSTGKYTIGLGQS 244
QTE E+F E+S GK +G+G++
Sbjct: 431 QTEAERFSELSDGKVPVGVGEN 452
>04_04_1247 -
32043776-32043880,32044296-32044505,32044595-32045101,
32045362-32045583,32046054-32046184,32046737-32047745,
32047830-32047904,32047995-32048066,32048153-32048328,
32048494-32048646,32048739-32049234
Length = 1051
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 92 KQYTVNMGGKVENVGILAMELYFP-SQYVDQTELEKFDEVSTGKYTIGLGQ-SKMGFCSD 265
+Q+ + KV L++ +Y S+ D TEL K+D V T YTI + K F D
Sbjct: 457 RQWASELAAKVTESSKLSVLVYHGGSRTKDPTELTKYDVVVT-TYTIVANEVPKQNFDED 515
Query: 266 REDINS 283
E+ NS
Sbjct: 516 MEEKNS 521
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/63 (31%), Positives = 25/63 (39%)
Frame = -3
Query: 615 ATAPAPPVGLAGPFP*TAMSPATTMAFLPSQDEDSTQFMALKRAAVPP*QALVVSIPSMS 436
A APAP + L P P + +SP T P D+ A + P V PS
Sbjct: 225 APAPAPLLLLPAPPPSSDVSPVTVQVAAPPSSSDAAPVPATLLSDASPVIVQVPVPPSSD 284
Query: 435 VAP 427
AP
Sbjct: 285 AAP 287
>03_05_1075 - 30174725-30175363
Length = 212
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +2
Query: 161 PSQYVDQTELEKFDEVSTGKYTIGLGQSKMGFCSDREDINSICLTALHRLIDK 319
PS++ + F V K+T G +MGF ED+N + A + DK
Sbjct: 124 PSRHSARQAARPFS-VPVSKHTEGRLLKEMGFIDKEEDLNDEAIAAFVKAFDK 175
>09_04_0494 +
18056679-18056819,18058307-18058374,18058708-18058811,
18058902-18058945
Length = 118
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 615 ATAPAPPVGLAGPFP*TAMSPATT 544
A +PAPP G AG A +PATT
Sbjct: 19 AASPAPPEGAAGGAATPAAAPATT 42
>06_03_0395 - 20354713-20355570
Length = 285
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = -3
Query: 606 PAPPVGLAGPFP*TAMSPATTMAFLPSQDEDSTQFMALKRAAV 478
P PP A P P T PAT A + + +TQ RAAV
Sbjct: 76 PPPPQTAAAPSPSTTKQPATAAAVTNRRRQPTTQIR--PRAAV 116
>03_01_0165 + 1335444-1335747,1335890-1336167,1337440-1337496
Length = 212
Score = 27.5 bits (58), Expect = 9.5
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +2
Query: 368 TIIDKSKSV--KTFLMTLFAKEGATDIEGIDTTNACYGGTAALFNAINWVESSSWDGRKA 541
++ID+++ ++ L+ L A A + + AC GG A L WV + G
Sbjct: 72 SLIDQARGFHFRSSLVDLPAVSAARSLLILCAYTACGGGAAYL-----WVAVACSVGSVC 126
Query: 542 IVVAGDIAVYGKGPARPTGGAGAVAMLIGPDA 637
VVA V+G P R G L+ +A
Sbjct: 127 YVVAKAAVVFGAAPDRAVLGLQGKGQLVAVEA 158
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 27.5 bits (58), Expect = 9.5
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Frame = +2
Query: 200 DEVSTGKYTIGLGQSKMGFCSDR--EDINSICLTALHRLIDKQKINLHDIGRLEVGTETI 373
D V Y + ++K G D ED+ ++ L A+ +D KIN +IG + VGT
Sbjct: 48 DVVVVAAYRTPICKAKRGGFKDTYPEDLLTVVLKAV---LDNTKINPGEIGDIVVGTVLG 104
Query: 374 IDKSKSVKTFLMTLFAKEGATDIEGIDTTN-ACYGGTAALFNAINWVESSSWD 529
++++ +A G + + T N C G A+ + +++ +D
Sbjct: 105 PGSQRAIECRAAAFYA--GVPENVPVRTVNRQCSSGLQAVADVAAAIKAGFYD 155
>01_06_0628 +
30707353-30707548,30707846-30707958,30708090-30708197,
30708305-30708543,30708774-30708861,30708942-30709075,
30709285-30709498,30709671-30709759,30710194-30710262,
30710560-30710683
Length = 457
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 636 ASGPINIATAPAPPVGLAGPFP 571
A+ PI +A PAPP AGP P
Sbjct: 23 ATRPIALAPPPAPPETFAGPGP 44
>01_03_0262 - 14387045-14387187,14387334-14387420,14387439-14387496
Length = 95
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 289 TNRIDVFTIRTETHFTLAQTNSV-LASRHLIKFF*FSLINVLRREIKFH 146
T R ++ + +T + L + + L + L+K+F S N L E KFH
Sbjct: 21 TKRYQIYNRKNDTSWYLLKKGKIALYEKVLVKYFFSSTTNNLTAEKKFH 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,576,083
Number of Sequences: 37544
Number of extensions: 327370
Number of successful extensions: 959
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -