Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18m15
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 31 0.093
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual 25 0.13
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 30 0.28
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 28 0.87
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 1.1
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 27 1.5
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 27 2.0
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 27 2.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 3.5
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 26 4.6
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 25 6.1
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 8.1
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy... 25 8.1
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 25 8.1
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 31.5 bits (68), Expect = 0.093
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = -3
Query: 306 REAIFFAQSSEGSSTIQYGFSKHGFSMNLMGILNKDKILLISACLKSTCS*ANHNKY 136
RE I +A SS+ + Y FS+ + + +LN+ KI ++ ACL C N ++Y
Sbjct: 752 REGIIYATSSDDT----YTFSRSIYVKAMRDLLNEAKIQIMHACLIDVCL-KNRDRY 803
>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.0 bits (52), Expect(2) = 0.13
Identities = 10/47 (21%), Positives = 24/47 (51%)
Frame = +2
Query: 245 EKPYWIVELPSEDCAKKIASRSVLMKNCIELWSRAKSIDQLHINLRK 385
+ P+ + + S + A++ RS+ K E++ S +LH +++
Sbjct: 74 QNPFMLAVVNSNEDARRWIRRSIFCKGIYEIYCIGDSFTRLHEKMKE 120
Score = 24.6 bits (51), Expect(2) = 0.13
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 482 NSSFKIEVETFCKHFSIQEKLDKIEEF 562
NSS+K ETF +++E+L I +F
Sbjct: 132 NSSYKFTFETFGTRRTMKEQLSIISDF 158
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 29.9 bits (64), Expect = 0.28
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Frame = +2
Query: 179 AEINSILSLFKIPIKFIEKPCLEKPYWIVELPSEDCAKKIASRSVLMKNCIELWSRAKS- 355
A + S SL K+ K I +++ V E A +++S LM +W+ S
Sbjct: 22 ATLGSKHSLRKLHKKDIMSVDIDEACDFVAFSPEPLALRLSSN--LMIGVTRVWAHQYSF 79
Query: 356 ----IDQLHINLRKSLQNTTSKWIFENVECA-EHICPKELI 463
+ LH+ +RK L + TSK F+N++ E PK+L+
Sbjct: 80 FHSQVSTLHLRVRKELDHFTSK-PFKNIDIQNEQTNPKQLL 119
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 28.3 bits (60), Expect = 0.87
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 284 CAKKIASRSVLMKNCIELWSRAKSIDQLHINLRKSLQNTTSK 409
C + VL+ C +W +D+L+ +L+ LQN K
Sbjct: 2257 CLSESDENDVLISRCCTMWLSNSHLDELNNSLQHYLQNLPCK 2298
>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 339 GQELKVLTNYILIYANHFKIPPLNGFSKMWN 431
G V++ Y+ Y + K P + GF +MWN
Sbjct: 150 GLSAYVISYYVEKYVDKAKFPIIKGFIEMWN 180
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 419 ENVECAEHICPKELIDVCCSPNSSFKIEVETFCKH 523
E V AE +E+ + CC S F+ E+E++ +H
Sbjct: 204 ELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEH 238
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 183 KSIVFCPYSKYPSNSLRNRVWRSRIGL*SSLQRIVRKRSP 302
KSI+ C ++ + LR+ +WR L S +RI ++P
Sbjct: 207 KSIICCLFTPFSYAILRSYIWRFAALLTSCCRRIAYTKTP 246
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 297 IFFAQSSEGSSTIQYGFSKHGFSMNLMGILNKDKILLISACLKST 163
+F + E S+I + FSKH F ++ + I+N K ++S L T
Sbjct: 486 VFSTSAQELMSSIIFLFSKHPFDISDVVIVNNIKYEVVSLSLLFT 530
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 312 TDREAIFFAQSSEGSSTIQYGFSKHGFSMNLMGILNKDKILLIS 181
T + + SS SST SK SM L G++ ILL++
Sbjct: 993 TSSSTSYTSSSSSSSSTTSAASSKASVSMGLNGLMIAAVILLVA 1036
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 4.6
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 257 WIVELPS-EDCAKKIASRSVLMKNCIELWSRAKSI 358
W V L + E+C+K + + NC ELW+ +
Sbjct: 23 WKVRLSAYEECSKSFSLSADGSDNCFELWNNQSEL 57
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 25.4 bits (53), Expect = 6.1
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +2
Query: 311 VLMKNCIELWSRAKSIDQLHINLRKSLQNTTSKWIFENVECAEHICPKEL 460
V MK C+ +W R ID HI L + + N+ + P+E+
Sbjct: 902 VFMKLCVNIWERFDFIDIEHI--MPLLDHACQQISLSNITQGTVVLPEEI 949
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 242 LEKPYWIVELPSEDCAKKIASRSVLMKNCIEL 337
LEK WI L D A K S +K+C ++
Sbjct: 1334 LEKNKWIFTLNENDIATKFDENSSPIKDCSQV 1365
>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 299 ASRSVLMKNCIELWSRAKSIDQLHINLRKSLQNTTSKWIFENVECAEHI 445
A+ VL +N +E W R +S D ++ K L + K V CAE +
Sbjct: 484 ATNVVLPENGVE-WQRLRSGDYSNLPNLKDLLLSKEKVQINKVRCAESL 531
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +2
Query: 392 QNTTSKWIFENVECAEHICPKELIDVCCSPNSSFKIEVETFCKHFSIQ 535
QNT + + + CP L+DV K+++E++ K+ S++
Sbjct: 181 QNTRQLNLSKIATLIGYDCPLALVDVVTQKQIPNKMDMESWVKYMSLE 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,306
Number of Sequences: 5004
Number of extensions: 52018
Number of successful extensions: 153
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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