Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18m15
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0224 - 21059328-21059888,21060388-21060462,21060715-210607...    42   3e-04
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377...    29   2.0  
07_03_0868 - 22157711-22157937,22158112-22158758,22158918-22159570     29   2.7  
08_02_0464 - 17463066-17465136,17470821-17471650                       29   3.6  
03_05_0092 - 20714102-20717902                                         29   3.6  
01_06_1730 + 39494738-39495853                                         28   6.2  

>02_04_0224 -
           21059328-21059888,21060388-21060462,21060715-21060798,
           21060866-21061183,21061511-21061722,21061766-21062030
          Length = 504

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 11/152 (7%)
 Frame = +2

Query: 125 MWRRYLLWFAHEHVDFRHAEINSILSLFKIP-------IKFIEKPCLEKPYWIVELPSED 283
           MW  YL  F H  +D+R  E+ S+  LF  P        +  E   ++ P+ +V LP ++
Sbjct: 1   MW--YLCVFYHRLLDYRRPEVQSLAELFGGPGAGDAVEWRMPENHHVDSPFHLVRLPGDE 58

Query: 284 -CAKKIASRSVLMK--NCIELWSRAKSIDQLHINLRKSLQNTTSKWI-FENVECAEHICP 451
             A +IA+RS        I   S AK +  L   L K +     +   +E +E      P
Sbjct: 59  RLAAQIANRSKSASPDRLIHHHSLAKLL--LAGLLVKGIYELWGQGTTYEELERVVMAYP 116

Query: 452 KELIDVCCSPNSSFKIEVETFCKHFSIQEKLD 547
           +E      +P S+FKI V++F K  S QE+ D
Sbjct: 117 EERKLPYLTPESTFKIVVDSFGKVISFQEQND 148


>02_05_1331 +
           35736543-35736638,35737407-35737525,35737670-35737715,
           35738117-35738172,35738452-35738547,35738844-35738961,
           35739406-35739672,35740023-35740124,35740302-35740659,
           35740750-35740863,35741045-35741676,35741895-35742103,
           35742597-35742819,35743419-35743538,35743888-35743914,
           35744281-35745045,35745431-35748511
          Length = 2142

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 501 KSKHSANIFQSRKNWIKLRNFTY 569
           K  H A+ FQ +K WI L NF +
Sbjct: 76  KGAHDASTFQKKKLWIGLENFVF 98


>07_03_0868 - 22157711-22157937,22158112-22158758,22158918-22159570
          Length = 508

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
 Frame = +2

Query: 317 MKNCIELWSRAKSI-DQLHINLRKSLQNTTSKWIFENVECAEHICPKELIDVCCSPNSSF 493
           +K+   LWS    +  + H+   KS + T   W + +    E    +  + V   P + +
Sbjct: 279 LKHQTHLWSLLAQLKSREHLAQCKSCKQTNGHWKYYDGNLFEEQILQTDLQVDTYPENDY 338

Query: 494 KIEVETFCKHFSIQEKLDKIEEF 562
           + E + F +HF         EE+
Sbjct: 339 QAEEDEFGRHFDTDSNYYDAEEY 361


>08_02_0464 - 17463066-17465136,17470821-17471650
          Length = 966

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +2

Query: 191 SILSLFKIPIKFIEK----PCLEKPYWIVELPSEDCAKKIASRSVLMKNCIELW 340
           SILS   IP+ F+      PCL + +W+     + C K IA    L +  +++W
Sbjct: 732 SILSARPIPVDFLASLSPPPCLLQRFWMWNSYFQRCPKWIAPLDRLTELKLDVW 785


>03_05_0092 - 20714102-20717902
          Length = 1266

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -3

Query: 411 HLEVVF*SDLRKLICNWSILLALDHNSIQFFIKTDREAIFFAQSSEGSSTIQY 253
           HL ++  ++L KLI + S+ ++    S Q F++  R  IFFA  S     I++
Sbjct: 587 HLTIMT-NNLSKLINDLSLKISHSSGSDQHFLQRIRTIIFFADFSNSDEFIEF 638


>01_06_1730 + 39494738-39495853
          Length = 371

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 125 MWRRYLLWFAHEHVDFRHAEINSILSLFKIPIKFIEK 235
           +W  Y  W  H HV   H E +     FK  +++I +
Sbjct: 42  LWDLYERWQEHHHVPRHHGEKHRRFGAFKDNVRYIHE 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,106,267
Number of Sequences: 37544
Number of extensions: 275318
Number of successful extensions: 643
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)