Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18m14
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.9  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 400 LKARYPDRIILLRG-NHETCQITKVYGFYDECLNKYGNAKCME 525
           L+ +Y    + + G   E+  I K+Y ++D+C     NA  +E
Sbjct: 437 LQPQYSQSELQMPGVKFESVNIDKLYTYFDKCDTLINNAVAVE 479


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 400 LKARYPDRIILLRG-NHETCQITKVYGFYDECLNKYGNAKCME 525
           L+ +Y    + + G   E+  I K+Y ++D+C     NA  +E
Sbjct: 437 LQPQYSQSELQMPGVKFESVNIDKLYTYFDKCDTLINNAVAVE 479


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 624 IIDISGDRPPXTHRTVSSINAA 559
           II+ +GD+PP T+    ++ A+
Sbjct: 156 IIERNGDKPPLTYHQFQTVVAS 177


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 295 LFHIGGQVPYTKYIFM 342
           L H GG++ +TK I++
Sbjct: 244 LAHNGGEIAWTKVIYV 259


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 295 LFHIGGQVPYTKYIFM 342
           L H GG++ +TK I++
Sbjct: 244 LAHNGGEIAWTKVIYV 259


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 295 LFHIGGQVPYTKYIFM 342
           L H GG++ +TK I++
Sbjct: 244 LAHNGGEIAWTKVIYV 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,061
Number of Sequences: 438
Number of extensions: 3480
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)