Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18m11
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    26   3.7  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   6.5  

>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 333 SNWDKKGTQNDKTFTEHKPAVSTDYSTFSKLLPSYDGSSR 452
           +N D K   ++ TF+   P  S +YS FS  L   D  +R
Sbjct: 169 NNCDSKEVASETTFSLDAPNNSVNYSYFSPNLLGNDSKTR 208


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 456  LVFYIDSENVDNALNLIANSEDPNITFLIRNKLSDKVVDALSQS 587
            L  YI    +D+ L L  NSED  +   + N L+DK +   +QS
Sbjct: 1085 LSLYIFEMFMDDDLKLSENSEDWGLFSKLCNLLNDKNIVVRNQS 1128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,078
Number of Sequences: 5004
Number of extensions: 36130
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)