Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18m09
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    28   1.1  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.9  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   2.5  
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    27   2.5  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    25   5.9  
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...    25   7.7  
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...    25   7.7  
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    25   7.7  

>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -2

Query: 308 PPLAQ-SEKYPP*RRSKQP-SASRTRRKPPEWFLAILKRSTPTPSLSKN 168
           PPLA  S +     +S  P + SR     P     ILKRS+PT S+S+N
Sbjct: 400 PPLATPSSRNSKSTQSAVPENVSRFDSNEPSATSPILKRSSPTDSISQN 448


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 269 RSKQPSASRTRRKPPEWFLAILKRSTPTPSLSKNVCKSCMPI 144
           RS+ PS S+ R +  E  + + KR   +PS+  ++ K C PI
Sbjct: 288 RSRTPS-SKKRTRWGEEIIDLSKRRAVSPSIYYDLDKKCSPI 328


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -2

Query: 305 PLAQSEKYPP*RRSKQPSASRTRRKPPEWFLAI--LKRSTPTPSLSKNVCKSCMPIINFL 132
           P       PP   S QPS+SR+    P    +   + R +P+PS S    +S +P     
Sbjct: 366 PYVYRNNLPPSATSFQPSSSRSPSVDPNTVKSAQHIPRMSPSPSASALKTQSHVPSAKVP 425

Query: 131 TTTEL 117
            T++L
Sbjct: 426 PTSKL 430


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 259 CLDRLYGGYFSDWASG 306
           CLD L+GGY  DWA G
Sbjct: 131 CLDDLFGGY--DWAPG 144


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -2

Query: 314 HCPPLAQSEKYPP*RRSKQPSASRTRRKPPEWFLAILKRSTPTPSLSKNVCK 159
           H  PLA S        +  P+  +   K  E   ++ K++T TP  SK V K
Sbjct: 553 HHSPLATSSSEHEMEATPSPALLKKTNKRRELPSSLTKKNTRTPQRSKEVKK 604


>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 230 PPEWFLAILKRS-TPTPSLSKNVCKSCMPIINFL 132
           P  W L  L  +  P PS   +  + C+P+I FL
Sbjct: 15  PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFL 48


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 230 PPEWFLAILKRS-TPTPSLSKNVCKSCMPIINFL 132
           P  W L  L  +  P PS   +  + C+P+I FL
Sbjct: 15  PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFL 48


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 230 PPEWFLAILKRS-TPTPSLSKNVCKSCMPIINFL 132
           P  W L  L  +  P PS   +  + C+P+I FL
Sbjct: 15  PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFL 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,538
Number of Sequences: 5004
Number of extensions: 49692
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)