Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18m09
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0044 - 11855569-11855664,11855775-11855891,11856572-118566...    29   2.6  
07_01_1181 + 11203073-11203604,11204124-11204143                       29   3.4  
07_03_0383 - 17476271-17479228,17480466-17480750                       28   6.0  
03_05_0884 - 28487013-28487271,28487355-28487516,28487594-284878...    27   7.9  

>09_03_0044 -
           11855569-11855664,11855775-11855891,11856572-11856682,
           11856768-11856874,11857182-11857221,11857328-11857408,
           11857578-11857631,11857800-11857860,11857984-11858029,
           11858276-11858352,11858448-11858563,11858654-11858890
          Length = 380

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 352 ALAEFQVSLCVCFNGSHPTPPALP 423
           +LA F +S C+  + SHPTP   P
Sbjct: 59  SLASFSLSSCISSSSSHPTPQTHP 82


>07_01_1181 + 11203073-11203604,11204124-11204143
          Length = 183

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = +1

Query: 277 GGYFSDWASGGQWARCVQFLTTLAQALAEFQVSLCVCFNGSHPTPPALP 423
           G   S  +S   W  CV  LTT +              +G  P PPALP
Sbjct: 30  GAASSSSSSSSSWRSCVPLLTTFSSVFGSSAARRGGGLSGGEP-PPALP 77


>07_03_0383 - 17476271-17479228,17480466-17480750
          Length = 1080

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
 Frame = -3

Query: 400  EIH*NKH-KVILEIQPKLVLVLLRTVH--IGPIVHHLPNLRSIHRKDDPNN 257
            E+H NK  K IL ++    L  L+ VH  +  +VH +P+LR++H  DD N+
Sbjct: 889  EVHRNKKLKRILNLES---LEDLKVVHCLVLKVVHGVPSLRAVH-SDDRNS 935


>03_05_0884 -
           28487013-28487271,28487355-28487516,28487594-28487802,
           28488490-28488630,28488876-28489071,28489207-28489379,
           28490095-28490142,28490301-28490378,28490526-28490792,
           28491689-28491842,28491928-28492064,28492459-28492536,
           28493039-28493216,28493589-28493803,28494063-28494422,
           28494497-28494973,28495561-28495665,28495838-28496020,
           28496105-28496263,28496937-28497154,28497737-28497905,
           28498262-28498568,28498699-28498826,28498902-28499060,
           28499194-28499364,28500258-28500376,28500604-28500853,
           28501007-28501759
          Length = 1950

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +2

Query: 5   NGFRLHLVHLICCLLEWVLFDLRVHIFIRYLFKGFKFSIQSLLR 136
           N  RL L  L  CL +W + D+ + +FI +L +G   S  SLLR
Sbjct: 388 NVIRL-LAELCVCLKKWEVVDMILPLFIEHLEEG-DASSPSLLR 429


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,352,275
Number of Sequences: 37544
Number of extensions: 324332
Number of successful extensions: 773
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)