Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18m09
(567 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY241928-1|AAO85277.1| 806|Caenorhabditis elegans xylosyltransf... 29 2.3
AJ496235-1|CAD42732.1| 806|Caenorhabditis elegans peptide O-xyl... 29 2.3
AC025722-4|AAK68509.3| 806|Caenorhabditis elegans Squashed vulv... 29 2.3
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 29 3.1
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 28 4.1
Z80223-4|CAB02318.1| 229|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z70211-2|CAA94158.2| 272|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z68315-7|CAA92672.1| 735|Caenorhabditis elegans Hypothetical pr... 27 9.4
U23830-1|AAB01508.1| 730|Caenorhabditis elegans suf-1 protein. 27 9.4
AC006676-6|AAK71384.2| 652|Caenorhabditis elegans Hypothetical ... 27 9.4
>AY241928-1|AAO85277.1| 806|Caenorhabditis elegans
xylosyltransferase protein.
Length = 806
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 78 IFSLDIYLRVSSFQFSRC*EINNGHTRLTNIFRK*RCRC*SL 203
+ L+ + +F C ++ + RLTN +RK CRC SL
Sbjct: 428 LLPLESFYHTLAFNSEFCDDLLMSNLRLTNWYRKQGCRCASL 469
>AJ496235-1|CAD42732.1| 806|Caenorhabditis elegans peptide
O-xylosyltransferase protein.
Length = 806
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 78 IFSLDIYLRVSSFQFSRC*EINNGHTRLTNIFRK*RCRC*SL 203
+ L+ + +F C ++ + RLTN +RK CRC SL
Sbjct: 428 LLPLESFYHTLAFNSEFCDDLLMSNLRLTNWYRKQGCRCASL 469
>AC025722-4|AAK68509.3| 806|Caenorhabditis elegans Squashed vulva
protein 6 protein.
Length = 806
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 78 IFSLDIYLRVSSFQFSRC*EINNGHTRLTNIFRK*RCRC*SL 203
+ L+ + +F C ++ + RLTN +RK CRC SL
Sbjct: 428 LLPLESFYHTLAFNSEFCDDLLMSNLRLTNWYRKQGCRCASL 469
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 277 GGYFSDWASGGQWARCVQFLTTLAQALAEFQVSLCVC 387
GGY+S+W +GG +T+ Q S C C
Sbjct: 907 GGYWSEWTTGGSCPTTCGSCSTVTQKRVCMSPSTCPC 943
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/77 (23%), Positives = 36/77 (46%)
Frame = -2
Query: 386 QTQSDT*NSAKACASVVKNCTHRAHCPPLAQSEKYPP*RRSKQPSASRTRRKPPEWFLAI 207
++ S++ + +++ + VVKN + P+ PP RR + S + R PP
Sbjct: 56 RSSSESDSRSRSSSPVVKNSPPKRKREPIRAPSASPP-RRRRDDSPRKRSRSPPR----- 109
Query: 206 LKRSTPTPSLSKNVCKS 156
R +P+P + + +S
Sbjct: 110 RTRRSPSPPRRRRISRS 126
>Z80223-4|CAB02318.1| 229|Caenorhabditis elegans Hypothetical
protein F26D10.11 protein.
Length = 229
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 74 LSNQIKPIPTGNKLSVQDEDGSH 6
+SN I+P+P K+S+QD SH
Sbjct: 200 ISNTIQPVPRPRKMSLQDSFYSH 222
>Z70211-2|CAA94158.2| 272|Caenorhabditis elegans Hypothetical
protein K11E4.2 protein.
Length = 272
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 78 IFSLDIYLRVSSFQFSRC*EINNGHTRLTNIFR 176
++ LD++L +SSF + C I +G T L ++
Sbjct: 84 VYQLDLFLNISSFTIT-CFHIQDGRTHLLGRYK 115
>Z68315-7|CAA92672.1| 735|Caenorhabditis elegans Hypothetical
protein F28C6.6 protein.
Length = 735
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 340 LLRTVHIGPIVHHLPNLRSIHRKDDPNNLR 251
LL HI P + ++ +R I R + PNN R
Sbjct: 354 LLGIEHINPTLTYVQLMRFIRRSEGPNNAR 383
>U23830-1|AAB01508.1| 730|Caenorhabditis elegans suf-1 protein.
Length = 730
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 340 LLRTVHIGPIVHHLPNLRSIHRKDDPNNLR 251
LL HI P + ++ +R I R + PNN R
Sbjct: 349 LLGIEHINPTLTYVQLMRFIRRSEGPNNAR 378
>AC006676-6|AAK71384.2| 652|Caenorhabditis elegans Hypothetical
protein M04F3.5 protein.
Length = 652
Score = 27.1 bits (57), Expect = 9.4
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = -2
Query: 389 KQTQSDT*NSAKAC---ASVVKNCTHRAHCPPLAQSEKYPP*RRSKQPSASRTRRKPPEW 219
+QT SD A +S + N +H PPL QS ++ + + S +R PP
Sbjct: 521 QQTMSDPGKRASVSTLGSSNMSNYGVLSHQPPLPQSANSMQNQQVRMRTTSASRPPPPAR 580
Query: 218 FLAILKRSTPT-PSLSK 171
+ + +TPT PS+++
Sbjct: 581 RTSQITAATPTAPSVAE 597
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,278,902
Number of Sequences: 27780
Number of extensions: 281305
Number of successful extensions: 698
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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