Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18m09
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   6.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.6  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 307 GQWARCVQFLTTLAQ 351
           G W+ C+QFL  + Q
Sbjct: 290 GHWSGCLQFLVPMLQ 304


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 307 GQWARCVQFLTTLAQ 351
           G W+ C+QFL  + Q
Sbjct: 258 GHWSGCLQFLVPMLQ 272


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -3

Query: 361 QPKLVLVLLRTVHIGPIVHHLPNLRSIHRKDDPNNLRRREPGAN 230
           QP  V + L+    G      P L      DDP++LRR+    N
Sbjct: 298 QPVQVYIQLKRPSDGATSEPFPFLMLPLGADDPDSLRRKRQKIN 341


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 1   DKWLPSSSCTLNLLPVGMGFI 63
           D +   + C LN++  G+GFI
Sbjct: 499 DTYTYDTICQLNIVHYGIGFI 519


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 36  FVACWNGFYLI 68
           FVACW  F+++
Sbjct: 315 FVACWLPFFIL 325


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/10 (60%), Positives = 6/10 (60%)
 Frame = +3

Query: 210 CEKPFWRFAP 239
           C  P WRF P
Sbjct: 548 CSAPVWRFQP 557


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,527
Number of Sequences: 438
Number of extensions: 3682
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)