Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18m07
(594 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24H6.02c |||TIM23 translocase complex subunit Tim15|Schizosa... 77 3e-15
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 0.89
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 27 1.6
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 27 2.7
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 26 3.6
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 26 3.6
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 26 4.8
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 26 4.8
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar... 26 4.8
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc... 25 6.3
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 25 6.3
>SPAC24H6.02c |||TIM23 translocase complex subunit
Tim15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 175
Score = 76.6 bits (180), Expect = 3e-15
Identities = 36/79 (45%), Positives = 54/79 (68%)
Frame = +1
Query: 316 AEQKKTEGKFQLMFTCKKCNTRNSKIITKLAYYKGVVIVICHGCENKHLIADNLNWFSDM 495
A+Q + + + + FTC CNTR++ +K AY+ G V+V C C+N+HL+AD+L FS
Sbjct: 67 ADQLQPKPTYNVSFTCTVCNTRSNHNFSKQAYHNGTVLVQCPKCKNRHLMADHLKIFS-- 124
Query: 496 EGKKNIEDIMAEKGETVQK 552
E + IEDI+A+KGET +K
Sbjct: 125 EERVTIEDILAKKGETFKK 143
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 28.3 bits (60), Expect = 0.89
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 314 DKTSFNFVVVVLKSLGDCIFGVEVDRGAADIIKRLPKNE 198
D T F + ++ LGDCI G E + I R P NE
Sbjct: 335 DNTDVEFQTIAIEPLGDCIVGRERFKICEPIFHR-PSNE 372
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 253 PKIQSPRLFSTTTTKLNEVLSAEQKKTEGKFQLMFTC 363
P PR+ +T++KLN VLS ++ GK F C
Sbjct: 5 PTTAKPRI--STSSKLNTVLSKNKENVPGKLFKKFKC 39
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 382 NSKIITKLAYYKGVVIVICHGCENKHLIADNL 477
+++I+TK+A + I HG KH IA+ L
Sbjct: 456 HNEILTKIAPSHRPTVYIHHGSSKKHKIAEQL 487
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 448 ENKHLIADNLNWFSDMEG-KKNIEDIMAEKGETV 546
EN+++++ L SD++G KK++ + K ETV
Sbjct: 574 ENRNILSSKLKVLSDLKGEKKDVSKNIERKKETV 607
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 26.2 bits (55), Expect = 3.6
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Frame = +1
Query: 331 TEGKFQLMFTCKKCNTRNSKIIT-KLAYY------KGVVIVICHGCENKHLIADNLNWFS 489
++G+ L++TCK C S +I + Y K V+++ C GCE I W +
Sbjct: 58 SKGEANLIWTCKNCRKTCSFVIEGPFSPYNDSQETKKVLVLECRGCELVEFIPQG-EWIA 116
Query: 490 D-MEGKKNIEDIMAE 531
+ E ++I+ E
Sbjct: 117 NGAESNTLFDEIVLE 131
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1
Query: 426 NNTLVICQFRNNFTISCVTFLTS 358
NNT IC + N CV LTS
Sbjct: 725 NNTAFICSWLTNQPAECVNILTS 747
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 210 KAFNNIGGSPINFNSKNTVSEAFQHDNNKVK*SFISRTEEN*RKIP 347
KA N+ G I N + + E+ +H+ + + S I RTE++ +IP
Sbjct: 184 KATNDNNGL-IETNHNSKLEESSEHEEEEDEESNIERTEDSDHQIP 228
>SPCC1223.02 |nmt1|thi3|no message in thiamine
Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 552 FLYCFTFFSHDVFNV 508
F CF +FSHD+ NV
Sbjct: 257 FERCFAYFSHDISNV 271
>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 149 WNFTTKSIKVLVVILIFPFKLKVKIITSFTILL 51
WNF K+ L+V + +KLK TI+L
Sbjct: 177 WNFPNKNEAHLLVTSLLEYKLKGSYAAPHTIML 209
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +3
Query: 207 RKAFNNIGGSPINFNSKNTVSEAFQHDN 290
+++FN+ G N + N S F H N
Sbjct: 718 QRSFNSSNGKRSNVHKNNNASNTFSHSN 745
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,811
Number of Sequences: 5004
Number of extensions: 46342
Number of successful extensions: 128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -