Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18m07
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1244 - 35218220-35218704,35219209-35219290                       82   4e-16
06_03_1453 - 30258527-30258685,30259823-30260071,30260383-302604...    50   2e-06
01_05_0632 - 23836964-23837068,23837241-23837369,23838882-238389...    46   3e-05

>02_05_1244 - 35218220-35218704,35219209-35219290
          Length = 188

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 39/82 (47%), Positives = 53/82 (64%)
 Frame = +1

Query: 349 LMFTCKKCNTRNSKIITKLAYYKGVVIVICHGCENKHLIADNLNWFSDMEGKKNIEDIMA 528
           ++FTCK C TR+ K+ +K +Y KGVV+  C GC N HLIAD L WF +     +IED +A
Sbjct: 97  MIFTCKVCETRSMKMASKESYEKGVVVARCGGCNNFHLIADRLGWFGE---PGSIEDFLA 153

Query: 529 EKGETVQKIMSTDLEFIATELV 594
           E+GE V+K  +  L F   +LV
Sbjct: 154 EQGEEVKKGSTDTLNFTLEDLV 175


>06_03_1453 -
           30258527-30258685,30259823-30260071,30260383-30260477,
           30260543-30260657
          Length = 205

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 22/58 (37%), Positives = 30/58 (51%)
 Frame = +1

Query: 325 KKTEGKFQLMFTCKKCNTRNSKIITKLAYYKGVVIVICHGCENKHLIADNLNWFSDME 498
           K    + ++ FTC  C  R ++ I   AY  G V V C GC   H + DNLN F +M+
Sbjct: 117 KSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNIFHKLVDNLNLFHEMK 174


>01_05_0632 -
           23836964-23837068,23837241-23837369,23838882-23838966,
           23839429-23839658
          Length = 182

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +1

Query: 349 LMFTCKKCNTRNSKIITKLAYYKGVVIVICHGCENKHLIADNL 477
           + FTC  C  R  ++I ++AY +G + + C GC+  H   DNL
Sbjct: 120 VQFTCNACGERTKRLINRVAYERGTIFLQCAGCQVYHKFVDNL 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,968,945
Number of Sequences: 37544
Number of extensions: 236211
Number of successful extensions: 581
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)