Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18m07
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   3.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.1  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 28  HDK*LHFNNNIVKLVIIFTLSLKGKIKMTTRTLIDFVVK 144
           +D  L   N +V+ V+  T +L  KIK+    LID  +K
Sbjct: 29  YDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLK 67


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 281 LKSLGDCIFGVEVDRGAADIIKRLPKNELPLLGK 180
           L ++GD I  VE D+   ++IK   K    +L K
Sbjct: 389 LPNVGDEILEVENDKILQEVIKFRQKQRAEILAK 422


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -2

Query: 122 VLVVILIFPFKLKVKIITSFTILLLKCNY 36
           +LV +L+ PF + V +  S+++    C++
Sbjct: 233 LLVAVLVMPFAVYVLVNGSWSLPGFVCDF 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,223
Number of Sequences: 438
Number of extensions: 3317
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)