Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18m05
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0879 - 7290890-7291694,7291810-7291943,7292089-7292227,729...    29   4.0  
03_05_0893 + 28566436-28566501,28566624-28566903,28567002-285671...    28   5.3  
03_06_0474 - 34184002-34184660,34184755-34184887,34185071-341858...    27   9.3  

>07_01_0879 -
           7290890-7291694,7291810-7291943,7292089-7292227,
           7292338-7292585
          Length = 441

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 140 FFCCYLDQHLCDDYKGKT 193
           FFCCYL + LC   KG T
Sbjct: 63  FFCCYLLRSLCPRRKGST 80


>03_05_0893 +
           28566436-28566501,28566624-28566903,28567002-28567188,
           28567353-28567423,28567523-28567600,28567687-28567774,
           28567875-28567930,28568054-28568121
          Length = 297

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 68  KARVRLQRDRACVRPGRDAVYD 3
           K RVR+ ++R C   GR AVYD
Sbjct: 146 KERVRILQERRCDSKGRGAVYD 167


>03_06_0474 -
           34184002-34184660,34184755-34184887,34185071-34185886,
           34186013-34186104,34186710-34186863
          Length = 617

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
 Frame = +3

Query: 177 TTREKPYIIHKQGFVNPKNNS---LRCSS*DQTLN*HGG---QNNLEMTAMNQRTKK--- 329
           +T E  YI       N +N+S    RCS+ +Q  N  G    Q ++    M+  T K   
Sbjct: 76  STTENDYICSDSRVFNYRNSSGTSTRCSAGEQLKNGMGSCHSQPSVLAELMHLDTAKAET 135

Query: 330 NFNQLIRSKFSYS*KS 377
           +F+   RSKFSY+ KS
Sbjct: 136 SFSSSRRSKFSYNWKS 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,670,582
Number of Sequences: 37544
Number of extensions: 240979
Number of successful extensions: 409
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)