Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18m05
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z74030-13|CAA98445.2|  336|Caenorhabditis elegans Hypothetical p...    27   8.4  

>Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical
           protein H12I19.4 protein.
          Length = 659

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +3

Query: 291 NLEMTAMNQRTKKNFNQLIRSKFSYS*KS----HVKTNEGFFHIEEA 419
           NL + A+      NFN  IRS+F+Y+        V+ + GFF+  EA
Sbjct: 430 NLSVMALGNSYVLNFNDHIRSQFNYNYSEWRSLFVRDSFGFFYDGEA 476


>Z74030-13|CAA98445.2|  336|Caenorhabditis elegans Hypothetical
           protein D1054.12 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 220 TKPCLCMIYGFSLVVVTQMLIQITTKKN*RHSVSVFYLKN 101
           T PCLC+I+ FSL++   +   ++      H+VS   + N
Sbjct: 194 TIPCLCLIFMFSLIIPQALYFVLSIFWYLYHTVSKSQVTN 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,215,221
Number of Sequences: 27780
Number of extensions: 263680
Number of successful extensions: 552
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)