Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18m04
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe... 266 1e-72
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 27 2.4
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 27 2.4
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 26 5.5
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 25 7.3
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 25 9.6
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 25 9.6
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.6
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 9.6
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 25 9.6
>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 266 bits (653), Expect = 1e-72
Identities = 122/197 (61%), Positives = 152/197 (77%), Gaps = 3/197 (1%)
Frame = +2
Query: 2 NRIGNLLVPNDNYCLFEEWVTPLLDEMISEQMKEGTVWSPSRITARLGERINNESSVCYW 181
NRIGNL+VPNDNYC FEEW+ P+L++M+ EQ GT W+PS RLG+ IN+ESSV YW
Sbjct: 155 NRIGNLIVPNDNYCRFEEWIFPILNKMVEEQETLGTHWTPSSFIRRLGKEINDESSVLYW 214
Query: 182 AWRNNIPIFSPALTDGSLGDMMYFHSFK---RPXXXXXXXXXXXXXNTMAVKANNTGVXX 352
A++NNIPI+SPALTDGS+GDM+YFH++K RP NT AV+AN +G+
Sbjct: 215 AYKNNIPIYSPALTDGSIGDMLYFHTYKATPRP-LVLDIVADIRNMNTHAVRANKSGIII 273
Query: 353 XXXXXXKHHICNANLMRNGADYAVYVNTASEFDGSDAGARPDEAVSWGKIRPNANPVKLY 532
KHHICNANLMRNGA+++VY+N+A+EFDGSDAGARPDEAVSWGKIR +A VK+Y
Sbjct: 274 LGGGVVKHHICNANLMRNGAEWSVYINSANEFDGSDAGARPDEAVSWGKIRGDAKKVKVY 333
Query: 533 ADATLVFPLIVAQTFAK 583
+ +L+FPLIVA TFAK
Sbjct: 334 GEVSLLFPLIVAATFAK 350
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 138 RAVMRDGLQTVPSFICSEIISSNNGVTHSSNKQ 40
R + G SF S +ISSN H SNKQ
Sbjct: 40 RPSLLSGTSPTSSFFNSSMISSNYTFPHGSNKQ 72
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 27.1 bits (57), Expect = 2.4
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = +2
Query: 29 NDNYCLFEEWVTPLLDEMISEQMKEGTVW 115
+ N + +EWV LDE++++ +++ +W
Sbjct: 174 SSNGIVLDEWVFDRLDELLAQSLEDKELW 202
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 56 WVTPLLDEMISEQMKEGTVWSPSRITARLGERINNESSVCYWAWRNNIPIF 208
W T L++ + E++ V++P RLG R ++ SS +R+N F
Sbjct: 471 WGTTLINRKLREEVLR-EVFAPKHARRRLGTRFHSRSSHRPSVFRDNSVAF 520
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.4 bits (53), Expect = 7.3
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -3
Query: 352 YYDSSVVGFDGHGV 311
YY + V+GF+GHG+
Sbjct: 320 YYATKVLGFEGHGL 333
>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = +2
Query: 74 DEMISEQMKEGTVWSPSRITARLGERINNESSVCYWAWRNNIPIFSPALTD 226
D +S Q ++GT++ I +G +N + + +P+ LTD
Sbjct: 198 DNHVSVQTEDGTIYHADTILLAVGAYLNAYLNTSHRVCAKGLPVAHIQLTD 248
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 25.0 bits (52), Expect = 9.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -2
Query: 461 HHCRQIHWPCSRTQRNQ 411
H+CR+I WP Q N+
Sbjct: 238 HYCRKILWPSLHYQHNE 254
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 264 LNEWKYIMSPKDPSVNAGLNIGMLF 190
L W + ++ + SVNAGL G+ F
Sbjct: 275 LETWSFTLNASNVSVNAGLVFGLGF 299
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 467 HLHHCRQIHWPCSRTQRNQHHYASDLRY 384
H+H R++ S TQR H+ S RY
Sbjct: 1047 HIHLLRELEEEKSNTQRKIAHFESRRRY 1074
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 9.6
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 5 RIGNLLVPN-DNYCLFEEW-VTPLLDEMISEQMKEGTVWSPSRITARLGERINNE 163
R+ L VP D L +++ +TP ++ ++ T +PSR TA+ E E
Sbjct: 107 RVAGLWVPPADALALAKDYSMTPFINALLEASSTPSTYATPSRPTAQKSETSEGE 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,896
Number of Sequences: 5004
Number of extensions: 58359
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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