Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18m04
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023828-6|CAA19451.1|  371|Caenorhabditis elegans Hypothetical ...   258   2e-69
U53181-11|AAM29689.1|  315|Caenorhabditis elegans Hypothetical p...    35   0.044
U53181-10|AAA93489.2|  334|Caenorhabditis elegans Hypothetical p...    35   0.044
L14714-1|AAA28180.2|  244|Caenorhabditis elegans Temporarily ass...    27   8.9  
DQ298419-1|ABC33802.1|  230|Caenorhabditis elegans metaxin 2 pro...    27   8.9  
AL033514-10|CAE47472.1|  436|Caenorhabditis elegans Hypothetical...    27   8.9  
AL033514-9|CAA22098.1|  605|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AL023828-6|CAA19451.1|  371|Caenorhabditis elegans Hypothetical
           protein Y17G7B.4 protein.
          Length = 371

 Score =  258 bits (632), Expect = 2e-69
 Identities = 116/196 (59%), Positives = 147/196 (75%), Gaps = 1/196 (0%)
 Frame = +2

Query: 2   NRIGNLLVPNDNYCLFEEWVTPLLDEMISEQMKEGTVWSPSRITARLGERINNESSVCYW 181
           NR GN+L+PNDNYC FE+W+ P+LDE + EQ ++   W+PS++  RLGERI +ESS+ YW
Sbjct: 171 NRAGNVLIPNDNYCAFEDWLMPILDECLVEQEEKHLNWTPSKLIQRLGERIGDESSILYW 230

Query: 182 AWRNNIPIFSPALTDGSLGDMMYFHSFKR-PXXXXXXXXXXXXXNTMAVKANNTGVXXXX 358
           A ++ IP+F PALTDGSLGDM+YFHS K  P             NT+AVK+  TG     
Sbjct: 231 AAKHRIPVFCPALTDGSLGDMLYFHSVKSSPGLRVDIVEDVRHINTIAVKSFKTGSIILG 290

Query: 359 XXXXKHHICNANLMRNGADYAVYVNTASEFDGSDAGARPDEAVSWGKIRPNANPVKLYAD 538
               KHHI NANLMRNGAD+ VY+NT  EFDGSD+GA+PDEAVSWGK++P+A  VK++A+
Sbjct: 291 GGVVKHHINNANLMRNGADHTVYINTGQEFDGSDSGAQPDEAVSWGKVKPSAGAVKVHAE 350

Query: 539 ATLVFPLIVAQTFAKH 586
           ATLVFPL+VA+TFAKH
Sbjct: 351 ATLVFPLLVAETFAKH 366


>U53181-11|AAM29689.1|  315|Caenorhabditis elegans Hypothetical
           protein F36D4.5b protein.
          Length = 315

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +2

Query: 2   NRIGNLL--VPNDNYCLFEEWVTPLLDEMISEQMKEGTVWSPSRITARLGERINNES 166
           NR+ NL   +P    C+ +EW+TP++ +   ++ K G+V S    T +L  R  N+S
Sbjct: 135 NRLANLSGSIPFLEKCIPQEWLTPIVLQASVDEKKRGSVDSAEEATEKLVVRSLNDS 191


>U53181-10|AAA93489.2|  334|Caenorhabditis elegans Hypothetical
           protein F36D4.5a protein.
          Length = 334

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +2

Query: 2   NRIGNLL--VPNDNYCLFEEWVTPLLDEMISEQMKEGTVWSPSRITARLGERINNES 166
           NR+ NL   +P    C+ +EW+TP++ +   ++ K G+V S    T +L  R  N+S
Sbjct: 154 NRLANLSGSIPFLEKCIPQEWLTPIVLQASVDEKKRGSVDSAEEATEKLVVRSLNDS 210


>L14714-1|AAA28180.2|  244|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 354, isoform a protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 333 LALTAMVFNLRRSPNMSMISP 271
           L +T++ FN+R+ PN+  ISP
Sbjct: 36  LRMTSLPFNVRQRPNVDFISP 56


>DQ298419-1|ABC33802.1|  230|Caenorhabditis elegans metaxin 2
           protein.
          Length = 230

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 333 LALTAMVFNLRRSPNMSMISP 271
           L +T++ FN+R+ PN+  ISP
Sbjct: 52  LRMTSLPFNVRQRPNVDFISP 72


>AL033514-10|CAE47472.1|  436|Caenorhabditis elegans Hypothetical
           protein Y75B8A.9b protein.
          Length = 436

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +2

Query: 11  GNLLVPNDNYC-LFEEWVTPLLDEM 82
           G +LV  D++C + EEW+ PLLD++
Sbjct: 248 GEVLVFLDSHCEVNEEWLPPLLDQI 272


>AL033514-9|CAA22098.1|  605|Caenorhabditis elegans Hypothetical
           protein Y75B8A.9a protein.
          Length = 605

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +2

Query: 11  GNLLVPNDNYC-LFEEWVTPLLDEM 82
           G +LV  D++C + EEW+ PLLD++
Sbjct: 248 GEVLVFLDSHCEVNEEWLPPLLDQI 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,640,798
Number of Sequences: 27780
Number of extensions: 335837
Number of successful extensions: 771
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)